BAC Information

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BAC

Clone NameB6Ng01-349O24
Chromosome2 (Build37)14 (Build37)
Map Location 7,275,094 - 7,276,17462,822,606 - 62,822,683
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUsp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648, LOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349O24.bB6Ng01-349O24.g
ACCGA130769GA130770
length1,083587
definitionB6Ng01-349O24.b B6Ng01-349O24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,275,094 - 7,276,174)(62,822,606 - 62,822,683)
sequence
gaattccctgtaatcaaaatctcgttctgtctcactctccatctaaagag
aaacttgcaaatatttgtgctgtggatgacatctagggtaacaaattgta
atgtgtaacaccaaatatcagcagttctgtatcttaacaacagaaaaatg
tgatgcccatgctaaccacagttgcacaattagcataagactatccattc
aaggatgcccagtctggatactttaggaactcctaatatgatccattagt
cattttttgtctgtctgtctatctgtttgtttctgccatttgatgagttc
ctcccctccagtttaacacagttatctctccatttccttttttgaaatcc
ctttgccattggaaggttgaatgttcatctctcagtcttagctggtggtc
atatcaacaggccacctagcatcccaggcttagaaagaaatacccttgag
atggttttaggctgctccatcacaaaagcttcctgttgcctgacctgaga
tccttcatttcagtgattcctataacatcattaacaactatatgacggga
cttgttttctggatatggttgaatccctttactgctcctgtactgttctg
agttccacacaagagtaatagccagtgtcttagagaagtcaagccaaaca
ctcctactggatcaaactcttgtaacactggatacggccttgtgctatta
ctttggtctagatttagttatttcctcttaaatctgctcacaagctagag
gccatgtgatatttaatataataaagaccaagggactttataggtcagcc
ttccaacagatcccacaggtctgatttgatgaaagaatagcaatttttcc
ttgatatagcaatcttactggattagaagacttccctttcttttctttct
tttttctttctttttttttttattttatattttctttttttgtgtgtgca
catatgtatacatgttcatgtctgtgctctgtacatgcatacttgtatgt
gcatgtggagccaaaggtcaattttttagagttcttctttactgatcccc
acttacttatttgagaacaggtctcctcactga

gaattcagagaaataatatccacataactaaacgtagatataaagatggg
gacataacaacaggcactgagcagatccagggaatcataaaaagggtgta
gtctgttaaattggaaaatctaaaagaaatgggtatttttcttaacacca
aagttaaagcaaaatcagataagcaatttaagctataaattcacatgaag
cagaagcagtatttaaagtctaccaaaacaaaacaaaaacaaataaacaa
ccctccacaacccccacaaacaggcccaggtggttttagtgcagaatttt
aacagattttcaaagaagtattaaagacacatgaaagtattaaacacaga
cacaaacaattctcaataaaatactagaaaactgggtccaagaacaaact
gaaaatatcacccactgtaatcaagtaggcttaatcctggagtggagggg
ggagagttcagcatatctaaattgataaatgtaattcatcatataaacaa
actacaggaaaaaaacaacatgattatatatatgatcatctcattagatg
cagaaaagagttgggttttttgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_7275094_7276174
seq2: B6Ng01-349O24.b_50_1132 (reverse)

seq1  TCAGTGA-GAGACCCTGTCTCAAAT-AGTAAGGTGGGGATCAGTTAAAGA  48
      ||||||| ||||||   |||||||| ||||| ||||||||||| ||||||
seq2  TCAGTGAGGAGACCTGTTCTCAAATAAGTAA-GTGGGGATCAG-TAAAGA  48

seq1  AG-ACTCT-AAAAATTGACCTTTGGCTCCACATGCACATACAAGTATGCA  96
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTAAAAAATTGACCTTTGGCTCCACATGCACATACAAGTATGCA  98

seq1  TGTACAGAGCACAGACATGAACATGTATACATATGTGCACACACAAAAAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGAGCACAGACATGAACATGTATACATATGTGCACACACAAAAAA  148

seq1  AGAAAATATAAAAT-AAAAAAAAAAGAAAGAAAAAAGAAAGAAAAAGAAA  195
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  AGAAAATATAAAATAAAAAAAAAAAGAAAGAAAAAAGAAAG-AAAAGAAA  197

seq1  AGGAAGTCTTCTAATCCAGTAAGATTGCTATATCAAGGAAAAATTGCTAT  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTCTTCTAATCCAGTAAGATTGCTATATCAAGGAAAAATTGCTAT  247

seq1  TCTTTCATCAAATCAGACCTGTGGGATCTGTTGGAAGGCTGACCTATAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATCAAATCAGACCTGTGGGATCTGTTGGAAGGCTGACCTATAAA  297

seq1  GTCCCTTGGTCTTTATTATATTAAATATCACATGGCCTCTAGCTTGTGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTGGTCTTTATTATATTAAATATCACATGGCCTCTAGCTTGTGAG  347

seq1  CAGATTTAAGAGGAAATAACTAAATCTAGACCAAAGTAATAGCACAAGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTAAGAGGAAATAACTAAATCTAGACCAAAGTAATAGCACAAGGC  397

seq1  CGTATCCAGTGTTACAAGAGTTTGATCCAGTAGGAGTGTTTGGCTTGACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCCAGTGTTACAAGAGTTTGATCCAGTAGGAGTGTTTGGCTTGACT  447

seq1  TCTCTAAGACACTGGCTATTACTCTTGTGTGGAACTCAGAACAGTACAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGACACTGGCTATTACTCTTGTGTGGAACTCAGAACAGTACAGG  497

seq1  AGCAGTAAAGGGATTCAACCATATCCAGAAAACAAGTCCCGTCATATAGT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAAAGGGATTCAACCATATCCAGAAAACAAGTCCCGTCATATAGT  547

seq1  TGTTAATGATGTTATAGGAATCACTGAAATGAAGGATCTCAGGTCAGGCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGATGTTATAGGAATCACTGAAATGAAGGATCTCAGGTCAGGCA  597

seq1  ACAGGAAGCTTTTGTGATGGAGCAGCCTAAAACCATCTCAAGGGTATTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGCTTTTGTGATGGAGCAGCCTAAAACCATCTCAAGGGTATTTC  647

seq1  TTTCTAAGCCTGGGATGCTAGGTGGCCTGTTGATATGACCACCAGCTAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGCCTGGGATGCTAGGTGGCCTGTTGATATGACCACCAGCTAAG  697

seq1  ACTGAGAGATGAACATTCAACCTTCCAATGGCAAAGGGATTTCAAAAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGAGATGAACATTCAACCTTCCAATGGCAAAGGGATTTCAAAAAAG  747

seq1  GAAATGGAGAGATAACTGTGTTAAACTGGAGGGGAGGAACTCATCAAATG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGAGAGATAACTGTGTTAAACTGGAGGGGAGGAACTCATCAAATG  797

seq1  GCAGAAACAAACAGATAGACAGACAGACAAAAAATGACTAATGGATCATA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAACAAACAGATAGACAGACAGACAAAAAATGACTAATGGATCATA  847

seq1  TTAGGAGTTCCTAAAGTATCCAGACTGGGCATCCTTGAATGGATAGTCTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAGTTCCTAAAGTATCCAGACTGGGCATCCTTGAATGGATAGTCTT  897

seq1  ATGCTAATTGTGCAACTGTGGTTAGCATGGGCATCACATTTTTCTGTTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAATTGTGCAACTGTGGTTAGCATGGGCATCACATTTTTCTGTTGT  947

seq1  TAAGATACAGAACTGCTGATATTTGGTGTTACACATTACAATTTGTTACC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATACAGAACTGCTGATATTTGGTGTTACACATTACAATTTGTTACC  997

seq1  CTAGATGTCATCCACAGCACAAATATTTGCAAGTTTCTCTTTAGATGGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATGTCATCCACAGCACAAATATTTGCAAGTTTCTCTTTAGATGGAG  1047

seq1  AGTGAGACAGAACGAGATTTTGATTACAGGGAATTC  1081
      ||||||||||||||||||||||||||||||||||||
seq2  AGTGAGACAGAACGAGATTTTGATTACAGGGAATTC  1083


seq1: chr14_62822606_62822683
seq2: B6Ng01-349O24.g_291_652 (reverse)

seq1  ACACACACACACACACAAA----------CATTTAGGGAT----TTGGGT  36
      |||||||||||||||||||          | |||  | ||    |  | |
seq2  ACACACACACACACACAAAAAACCCAACTCTTTTCTGCATCTAATGAGAT  50

seq1  GGCCTTGGGGGT--TTGTTTTGTTTATTTGTTTTTGTTTTGTTT------  78
      |  | |     |  |  | |||||| |||  | | | |||||||      
seq2  GATCATATATATAATCATGTTGTTTTTTTCCTGTAG-TTTGTTTATATGA  99

seq1  --------------------------------------------------  78
                                                        
seq2  TGAATTACATTTATCAATTTAGATATGCTGAACTCTCCCCCCTCCACTCC  149

seq1  --------------------------------------------------  78
                                                        
seq2  AGGATTAAGCCTACTTGATTACAGTGGGTGATATTTTCAGTTTGTTCTTG  199

seq1  --------------------------------------------------  78
                                                        
seq2  GACCCAGTTTTCTAGTATTTTATTGAGAATTGTTTGTGTCTGTGTTTAAT  249

seq1  --------------------------------------------------  78
                                                        
seq2  ACTTTCATGTGTCTTTAATACTTCTTTGAAAATCTGTTAAAATTCTGCAC  299

seq1  --------------------------------------------------  78
                                                        
seq2  TAAAACCACCTGGGCCTGTTTGTGGGGGTTGTGGAGGGTTGTTTATTTGT  349

seq1  -------------  78
                   
seq2  TTTTGTTTTGTTT  362


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