BAC Information

Click to search

BAC

Clone NameB6Ng01-350A14
Chromosome2 (Build37)
Map Location 79,534,158 - 79,663,345
singlet/doubletdoublet
Overlap genePpp1r1c
Upstream geneLOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl, Neurod1, Ssfa2
Downstream genePde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350A14.bB6Ng01-350A14.g
ACCGA130840GA130841
length9931,066
definitionB6Ng01-350A14.b B6Ng01-350A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,662,746 - 79,663,345)(79,534,158 - 79,535,231)
sequence
gaattcaactttcctgaatacccccaggatttttcacttagcattgtggt
aagacttaaatacgtggatttaggtaatgtcttccctggcaggttgaaga
cggttgtctttatacctttatccccaggtagaaccggatgtagaatctat
tgattcagcactaagtgaattagctaaaatgtattcatttagagtagtat
ttgaacacataatactttctatgcgtgaggatatgcacagatctgaaaag
ttctttatgccttctatttaacaacttattattttttaactttttattga
ttctttgtgaatttcacatcatgcactccaactccattcagctccctgtc
tgtccatatctgccctcttccctggtaacctttccctccccacaaagaaa
ataaaacctaaaaaaaatgagtaagtaaataaataacaaaacaatgcact
aaaatcatttcgttgtggaatctgctgggtctggcacggtcttggtaagg
acagaataacacggttcctgtcccttggacagggccagcagtcatgggcc
tccatgagtgttgatggctgctgtgaacataaggcttgtttgtgtaataa
tgtgaatattttcacattcctacaaggaatgccctccctgttaacattaa
tgattccatgataatcagagacagcctgagtcccggagccacaagtgtgg
ttaatgtcgggcagcccttaagtccccacagggattaataactctaaaac
catgagttcaaaactacataatttctcaactacacaaaatataaggatgc
aataacagttatgagaggcttcacaaatctaaatagacttaagcaactgt
gctgtgagccaacttgtcagaaagatactaaggaaaggagataaaagaga
tttaaggagtggtgatcacatgagatcctacccaactaagtttttgttgt
gtttatgattacaaaagcagtcagattcccaagttcagggtta
gaattcaacactcagaaaacttttgttagaaacttcccttaaatctagaa
ctctctctcttctccccctctctctcttccctctctctcttctccctctc
tctcttctccctctctctcttctccctctctctcttttccctctctctct
tctccctctctcctctctgctctctctctctctctctttccctacacaca
cacacacacacacacacaaggagatctaactaacttttatttattctact
gatcaattttacttttacttttaagccacctggatccaaagcaaaagaat
ctctcttgcattttgtactcttactcgtcaagaattgttctggaaaactc
aaactttagtagtatgcaacttagtactatggaattatatatgcccatta
agatttttattaggttaactagtcccaagagctcttttggagcttgcaca
tggggagtaggggttggatatagctattcagatgccatcaactgaaaact
actcgtctcctatagtggaaacacaatctctactactgagtgctcagttt
gggaaggaatatgcatagaactggaatggagaagggaccttcacctagca
agtgagatcagctatccattctggccatgggagccgtgcggggagcctcg
ccgatgttatagctggatcatgatagtcttgccatagcactttctggttc
caatttaagactggggtggcctgacaaaagtatatggaaatattttaata
tacataaatgtaaagaataagaacggatcattttagtgtctactgggggg
ggggggaagaaaccacatttttaagtttaaatatagattttaaaataggt
tataatttttctattagaccttatatcaggcaggatgggaacagactgtt
actcaggacttgtaatttaagatcgatttgagcagtgtgcccgtctttcc
aaccaatttgattatgcgattatatttaactagtctgatttttatctttt
aagctttggggttctgtagtaagttattatgttttgatttatggagtcat
atagaagctcatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_79662746_79663345
seq2: B6Ng01-350A14.b_48_647 (reverse)

seq1  TTATTACACAAACAAGCCTTATGTTCACAGCAGCCATCAACACTCATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACACAAACAAGCCTTATGTTCACAGCAGCCATCAACACTCATGGA  50

seq1  GGCCCATGACTGCTGGCCCTGTCCAAGGGACAGGAACCGTGTTATTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGACTGCTGGCCCTGTCCAAGGGACAGGAACCGTGTTATTCTGT  100

seq1  CCTTACCAAGACCGTGCCAGACCCAGCAGATTCCACAACGAAATGATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAAGACCGTGCCAGACCCAGCAGATTCCACAACGAAATGATTTT  150

seq1  AGTGCATTGTTTTGTTATTTATTTACTTACTCATTTTTTTTAGGTTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATTGTTTTGTTATTTATTTACTTACTCATTTTTTTTAGGTTTTAT  200

seq1  TTTCTTTGTGGGGAGGGAAAGGTTACCAGGGAAGAGGGCAGATATGGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTGGGGAGGGAAAGGTTACCAGGGAAGAGGGCAGATATGGACA  250

seq1  GACAGGGAGCTGAATGGAGTTGGAGTGCATGATGTGAAATTCACAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGAGCTGAATGGAGTTGGAGTGCATGATGTGAAATTCACAAAGAA  300

seq1  TCAATAAAAAGTTAAAAAATAATAAGTTGTTAAATAGAAGGCATAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAAAGTTAAAAAATAATAAGTTGTTAAATAGAAGGCATAAAGAA  350

seq1  CTTTTCAGATCTGTGCATATCCTCACGCATAGAAAGTATTATGTGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAGATCTGTGCATATCCTCACGCATAGAAAGTATTATGTGTTCAA  400

seq1  ATACTACTCTAAATGAATACATTTTAGCTAATTCACTTAGTGCTGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACTCTAAATGAATACATTTTAGCTAATTCACTTAGTGCTGAATCA  450

seq1  ATAGATTCTACATCCGGTTCTACCTGGGGATAAAGGTATAAAGACAACCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTCTACATCCGGTTCTACCTGGGGATAAAGGTATAAAGACAACCG  500

seq1  TCTTCAACCTGCCAGGGAAGACATTACCTAAATCCACGTATTTAAGTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAACCTGCCAGGGAAGACATTACCTAAATCCACGTATTTAAGTCTT  550

seq1  ACCACAATGCTAAGTGAAAAATCCTGGGGGTATTCAGGAAAGTTGAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACAATGCTAAGTGAAAAATCCTGGGGGTATTCAGGAAAGTTGAATTC  600

seq1: chr2_79534158_79535231
seq2: B6Ng01-350A14.g_68_1133

seq1  GAATTCAACACTCAGAAAACTTTTGTTAGAAACTTCCCTTAAATCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACTCAGAAAACTTTTGTTAGAAACTTCCCTTAAATCTAGAA  50

seq1  CTCTCTCTCTTCTCCCCCTCTCTCTCTTCCCTCTCTCTCTTCTCCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTTCTCCCCCTCTCTCTCTTCCCTCTCTCTCTTCTCCCTCTC  100

seq1  TCTCTTCTCCCTCTCTCTCTTCTCCCTCTCTCTCTTTTCCCTCTCTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCCCTCTCTCTCTTCTCCCTCTCTCTCTTTTCCCTCTCTCTCT  150

seq1  TCTCCCTCTCTCCTCTCTGCTCTCTCTCTCTCTCTCTTTCCCTACACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCTCCTCTCTGCTCTCTCTCTCTCTCTCTTTCCCTACACACA  200

seq1  CACACACACACACACACAAGGAGATCTAACTAACTTTTATTTATTCTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACAAGGAGATCTAACTAACTTTTATTTATTCTACT  250

seq1  GATCAATTTTACTTTTACTTTTAAGCCACCTGGATCCAAAGCAAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATTTTACTTTTACTTTTAAGCCACCTGGATCCAAAGCAAAAGAAT  300

seq1  CTCTCTTGCATTTTGTACTCTTACTCGTCAAGAATTGTTCTGGAAAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTTGCATTTTGTACTCTTACTCGTCAAGAATTGTTCTGGAAAACTC  350

seq1  AAACTTTAGTAGTATGCAACTTAGTACTATGGAATTATATATGCCCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAGTAGTATGCAACTTAGTACTATGGAATTATATATGCCCATTA  400

seq1  AGATTTTTATTAGGTTAACTAGTCCCAAGAGCTCTTTTGGAGCTTGCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTATTAGGTTAACTAGTCCCAAGAGCTCTTTTGGAGCTTGCACA  450

seq1  TGGGGAGTAGGGGTTGGATATAGCTATTCAGATGCCATCAACTGAAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGTAGGGGTTGGATATAGCTATTCAGATGCCATCAACTGAAAACT  500

seq1  ACTCGTCTCCTATAGTGGAAACACAATCTCTACTACTGAGTGCTCAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTCTCCTATAGTGGAAACACAATCTCTACTACTGAGTGCTCAGTTT  550

seq1  GGGAAGGAATATGCATAGAACTGGAATGGAGAAGGGACCTTCACCTAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGAATATGCATAGAACTGGAATGGAGAAGGGACCTTCACCTAGCA  600

seq1  AGTGAGATCAGCTATCCATTCTGGCCATGGGAGCCGTGCGGGGAGCCTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATCAGCTATCCATTCTGGCCATGGGAGCCGTGCGGGGAGCCTCG  650

seq1  CCGATGTTATAGCTGGATCATGATAGTCTTGCCATAGCACTTTCTGGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGTTATAGCTGGATCATGATAGTCTTGCCATAGCACTTTCTGGTTC  700

seq1  CAATTTAAGACTGGGGTGGCCTGACAAAAGTATATGGAAATATTTTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAGACTGGGGTGGCCTGACAAAAGTATATGGAAATATTTTAATA  750

seq1  TACATAAATGTAAAGAATAAGAACGGATCATTTTAGTGTCTACTGGGGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAATGTAAAGAATAAGAACGGATCATTTTAGTGTCTACTGGGGGG  800

seq1  GGGGGGAAGAAACCACATTTT--AGGTTAAATATAGAATTTTAAAAATAG  848
      |||||||||||||||||||||  || |||||||||||  ||| |||||||
seq2  GGGGGGAAGAAACCACATTTTTAAGTTTAAATATAGA--TTTTAAAATAG  848

seq1  G-TATAATTTTTCTA-TAGACCTAATAACAGGCAGGAT-GGAACAGACTG  895
      | ||||||||||||| ||||||| ||| |||||||||| |||||||||||
seq2  GTTATAATTTTTCTATTAGACCTTATATCAGGCAGGATGGGAACAGACTG  898

seq1  TTACTCAAGGACCTGTAATTTAAGAACGATTTGAGCAGTGTGCCCGTCTT  945
      |||||| ||||| |||||||||||| ||||||||||||||||||||||||
seq2  TTACTC-AGGACTTGTAATTTAAGATCGATTTGAGCAGTGTGCCCGTCTT  947

seq1  TCCAAACCAATTTGATTATGCGGTATATTATTTAACTAGTCTGATTTTTA  995
      ||| ||||||||||||||||||  ||  ||||||||||||||||||||||
seq2  TCC-AACCAATTTGATTATGCG--ATTATATTTAACTAGTCTGATTTTTA  994

seq1  TCTTTTAAAGGCTTTGGGTTTCTTGGTAGTAAGTTTATTATGGTTTTGAT  1045
      ||||||||  |||||||| ||||  |||||||| ||||||| ||||||||
seq2  TCTTTTAA--GCTTTGGGGTTCT--GTAGTAAG-TTATTAT-GTTTTGAT  1038

seq1  TTATGGAGTCATAATTAGAAGC-CATCATT  1074
      |||||||||||||  ||||||| |||||||
seq2  TTATGGAGTCATA--TAGAAGCTCATCATT  1066