BAC Information

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BAC

Clone NameB6Ng01-350K22
Chromosome2 (Build37)
Map Location 66,101,132 - 66,102,169
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383705, 9330158F14Rik, Scn3a, Scn2a1, A330102K23Rik, Galnt3, LOC620893, Ttc21b
Downstream geneScn1a, LOC100039486, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350K22.bB6Ng01-350K22.g
ACCGA131282GA131283
length1,1741,031
definitionB6Ng01-350K22.b B6Ng01-350K22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacttattgtgttgagattagagatggtagcataattttgagatt
taagtagaaggaaaaataatttgggtgtttttgttgaatgttataataac
attaaaattatttacaatgtttcaggaccacatacaattatactttgtca
gctgccacctgctgttgagcataacaaaaacgttatttttttcatagtta
agaaatgttgagctgggcgtggtggcacacgcctttaatcccagcactca
ggaggcagaggcaggcggatttctgagttcaaggccagcatggtctacaa
agtgagttccaggacagccagggctgtacagagaaaacctgtcttgaaaa
cacaaaaagcaaaaaacaaaacaaacaaaaaagaaatgttagcaatagtg
tctgagtttgaagactgcatctgggatggattcctaagtgtggcagtctc
tggatggtctttccttcagtctctgtttcactctatgtccctgtatttcc
tttagacaagagaaaatctaggttaaaatgtttgagatgggtaggtagcc
acatccttaaatgggggccatgcctaacctcagatgtgttctctacaggt
tgtctctcccctctgttgggtatttcatctaatttcatccccatagagtc
ctgggagcctcttgctttcctggcatctgggactttgtggtggatatccc
cagttccccatcccccattgctacacacctctgttcaaactcctgacctg
tcatctgaactacatctcccctgtctcctcccattttggatcctgcctcc
tttttcctcttcccccttctctcctcctcccaagtccctcccaccctcta
ccttcagtgattattttgttcccccttctaagtaggactgaagcatccac
actttgggtcttcctccttcttgagtttcctgtggtctgtgagtgtatct
tgagtattctgagctttattccttatatccacttatcagtgagtgcatac
atgtgtgtcttttatgactgggctacctcactcagatgattactctagat
catcattgctagacttcatgagtctggttttattagctgaatagtactca
attggttaaatgttaacccaattcatatgctgatgaccatgatgctgcct
gaaccgaggcctgaattatagctg
gaattcagattcagttcataaataaagtgaaagataccttggatggatag
tgtgatggtttgaatatgcttggcttagggtttggcactctcaggaggtg
tggcttgctggagttggtgtggccttgttggaggaagtgtgtgactgtag
gggtgggctttgagatcctactcctggccacatgggagccagtcttctcc
tgtttgccttcagaataggatgtagaactctgagagttctccagcaccac
tattacctggatgctgccatgctttctaccttcatgataatggactgaac
cctttgaacctgcaagccagccccaactaaatgtcctgtgtaagagttgc
cttggctatagtggttcttcacagcaatggaaagcctatctaaggcagat
agataatttttcaatagtttctttgtttgaaatatacttatttatgtgat
gtgtatatgtgagagcctacatatatttatgtacattaggcatagaccag
gtgcccatggaaacaagaagagattgtcagattctccagactgttcccac
tttgttgaagaaagtcttactctatagcctaggctataactcactatgta
gcccagggtttccctaaactcttctcaaccttcctgcttttatctccaga
gggataggattactcgccagtaatgaacccatactcccagctaaatactt
ttaaaacatttatttatggcaatactaaaattctgtcattttgctcattc
actaaacagcaagtgatggttaggcagcaggtgtatgtattcctgtgtca
gagtggaagctaaattccaaatcacactcccccaaacctactgagaactg
caatgtgaaggaaatgaagaaaccaaacttctgtcctgatctgcccaggc
tagccccagaagatgctgcgtgagcacggtccttagtactgtctctttct
caaggtatgggtttgacatgatcataaactatcacagaaatctactgaga
gcacactgttttcaagtttaggtactttact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_66101132_66102169
seq2: B6Ng01-350K22.g_68_1098

seq1  GAATTCAGATTCAGTTCATAAATAAAGTGAAAGATACCTTGGATGGATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATTCAGTTCATAAATAAAGTGAAAGATACCTTGGATGGATAG  50

seq1  TGTGATGGTTTGAATATGCTTGGCTTAGGGTTTGGCACTCTCAGGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGGTTTGAATATGCTTGGCTTAGGGTTTGGCACTCTCAGGAGGTG  100

seq1  TGGCTTGCTGGAGTTGGTGTGGCCTTGTTGGAGGAAGTGTGTGACTGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGCTGGAGTTGGTGTGGCCTTGTTGGAGGAAGTGTGTGACTGTAG  150

seq1  GGGTGGGCTTTGAGATCCTACTCCTGGCCACATGGGAGCCAGTCTTCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCTTTGAGATCCTACTCCTGGCCACATGGGAGCCAGTCTTCTCC  200

seq1  TGTTTGCCTTCAGAATAGGATGTAGAACTCTGAGAGTTCTCCAGCACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCCTTCAGAATAGGATGTAGAACTCTGAGAGTTCTCCAGCACCAC  250

seq1  TATTACCTGGATGCTGCCATGCTTTCTACCTTCATGATAATGGACTGAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACCTGGATGCTGCCATGCTTTCTACCTTCATGATAATGGACTGAAC  300

seq1  CCTTTGAACCTGCAAGCCAGCCCCAACTAAATGTCCTGTGTAAGAGTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAACCTGCAAGCCAGCCCCAACTAAATGTCCTGTGTAAGAGTTGC  350

seq1  CTTGGCTATAGTGGTTCTTCACAGCAATGGAAAGCCTATCTAAGGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTATAGTGGTTCTTCACAGCAATGGAAAGCCTATCTAAGGCAGAT  400

seq1  AGATAATTTTTCAATAGTTTCTTTGTTTGAAATATACTTATTTATGTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTTTCAATAGTTTCTTTGTTTGAAATATACTTATTTATGTGAT  450

seq1  GTGTATATGTGAGAGCCTACATATATTTATGTACATTAGGCATAGACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGTGAGAGCCTACATATATTTATGTACATTAGGCATAGACCAG  500

seq1  GTGCCCATGGAAACAAGAAGAGATTGTCAGATTCTCCAGACTGTTCCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATGGAAACAAGAAGAGATTGTCAGATTCTCCAGACTGTTCCCAC  550

seq1  TTTGTTGAAGAAAGTCTTACTCTATAGCCTAGGCTATAACTCACTATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAAGAAAGTCTTACTCTATAGCCTAGGCTATAACTCACTATGTA  600

seq1  GCCCAGGGTTTCCCTAAACTCTTCTCAACCTTCCTGCTTTTATCTCCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGTTTCCCTAAACTCTTCTCAACCTTCCTGCTTTTATCTCCAGA  650

seq1  GGGATAGGATTACTCGCCAGTAATGAACCCATACTCCCAGCTAAATACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATAGGATTACTCGCCAGTAATGAACCCATACTCCCAGCTAAATACTT  700

seq1  TTAAAACATTTATTTATGGCAATACTAAAATTCTGTCATTTTGCTCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACATTTATTTATGGCAATACTAAAATTCTGTCATTTTGCTCATTC  750

seq1  ACTAAACAGCAAGTGATGGTTAGGCAGCAGGTGTATGTATTCCTGTGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACAGCAAGTGATGGTTAGGCAGCAGGTGTATGTATTCCTGTGTCA  800

seq1  GAGTGGAAGCTAAATTCCAAATCACACTCCCCCAAACCTACTGAGAACTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGAAGCTAAATTCCAAATCACACTCCCCCAAACCTACTGAGAACTG  850

seq1  CAATGTGAAGGAAATGAAGAAACCAAACTTCTGTCCTGATCTGCCCAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGAAGGAAATGAAGAAACCAAACTTCTGTCCTGATCTGCCCAGGC  900

seq1  TAGCCCCAGAAGATGCTGCGTGAGCACGGTCCTTAGTACTGTCTCCTTTC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TAGCCCCAGAAGATGCTGCGTGAGCACGGTCCTTAGTACTGTCT-CTTTC  949

seq1  TCAAGGTAATGGGTTTGACATGATCATAAACTATCACAGAAATCTACTGA  1000
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGT-ATGGGTTTGACATGATCATAAACTATCACAGAAATCTACTGA  998

seq1  GAGCAACACTTGTTTTTCCAAGTTTAAGTAACTTTACT  1038
      |||| |||| ||||||  |||||||| || ||||||||
seq2  GAGC-ACAC-TGTTTT--CAAGTTTAGGT-ACTTTACT  1031