BAC Information

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BAC

Clone NameMSMg01-045H06
Chromosome2 (Build37)
Map Location 155,233,753 - 155,383,897
singlet/doubletdoublet
Overlap geneNcoa6, LOC668938, Ggtl3, Acss2
Upstream geneSnta1, Cbfa2t2, Apba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2
Downstream geneGss, Myh7b, Trpc4ap, Edem2, Procr, Mmp24, Itgb4bp, 5530400B04Rik, 2410003P15Rik, Gdf5, Cep250, Ergic3, Fer1l4, Spag4, Cpne1, Rbm12, Nfs1, 2010100O12Rik, Rbm39, Phf20, Scand1, LOC632394, LOC628707, LOC669792, 2900097C17Rik, LOC668941, Epb4.1l1, 0610011L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045H06.T7 (MSMg01no045_h06.b1)MSMg01-045H06.TJ (MSMg01no045_h06.g1)
ACCAG276083AG276084
length795663
length of high quality
(start - end)		336 (132 - 467)336 (19 - 354)
definitionCHROMAT_FILE: MSMg01no045_h06.b1 PHD_FILE: MSMg01no045_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:25 2005CHROMAT_FILE: MSMg01no045_h06.g1 PHD_FILE: MSMg01no045_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,383,562 - 155,383,897)(155,233,753 - 155,234,085)
sequence
TTTTTTTTTTTTTTTTTTGTGTTTGGGTGGGGGGGGGGGGGNNTTTAATG
TCATTNNCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGA
ATACGCGGAATTCTGTGCCAGTTTACCTCTAGATTGAGTTAGAAAGCTTA
GATTCCTGCCTTTGTTACTAATGTGATTTTGGAAAAGGGAAATGAGATTG
AGATCTGACAGGTACTAGCCACAAAGACAGCAGCAGCTAACATTTAAGAA
CACTAACTATGCAGTTCCAGACTAACCCTTTTGTATGGATTATCTAATTT
AATAAAATGTAGGAGATAAAAGTACTATTTTTTAAAGACTTAAATTACAT
TCAAAGACAATAGGTAACAGCTTATCTGAAGTCTCTGAAAATCAGGGTCT
GAATACAGGCAGGCTGACTCCAGAGCCTACATGATTAGTCTTTAAGGTAC
AAAGACTCTTTTTTCTAATAATGGACCCCACGGGAAGGATTAAGACTAAG
TTCTCCTGACTCCAAAAATTTATCATCACGAATCTTGTGTGTTTCTCAGC
AGAGGACAAACTCTCAACAGGCATTATTAACTACTCATGCAAGATAAGGT
TTATAAACTCCTAAAACAAAGTATTCCTTAATCAGATGCTTTTCTTCCTC
CCAAAGATGCCCAGATTTCTCACCATCATAACCTTTCAGCTTTTCCCTTT
CCAGCTTCCTCCCCCTGGACTCATTTCGGAATTGTCATGCCCTTCCCCCG
AACATTTGCGTAAGAACTGCATTGCATATGAATAAGTCGCAATCC

GTCCGCCGAATTCTGTGGGTTCTCCTGGGATACCATTTTCCTTGAATTAC
TTCCCATAGGAGTATTCACAGACATCGGCATTCTCTGTTTATCAGGTGAT
GGTGGCACAGAGGCAGGTCCTTGCAAACCAACCATGACAGGTACATTGCC
ACTCTGCTGCACGGGCATTCTCTGGGAGTCTGGGTTCAGAGGACCCCGTG
GAGGATGGACATTTTGGGAGACTGGAAGCCTAATGGATTTAGGATCTTGC
TGCATCATGATCATCATCATCATTTGTTGTTGCTGCTGCTGCTGCTGGGA
CTGTGGCTGACTAGGTGGTGGTGGCTGCTGCTGCTGAGGCAGTTGTGGTT
GCGCCCGCCGCTGTGTTGTCTGTGTTGTGGGTGCGACATGCTGCATGAGC
TGATGAGGCATCTGCGGTAGCGGCCTCTGTTCAACTGGCTGTGGATAACC
TATAACATGCCTCTCCAAAATCAGGGAAGTTAGATTTTTTCAGTGAGAAA
ACTCTTGCTACCTTTTATAGTATAGCTTATCATTTACTCATACAGTAGCC
CACTTGTGTACATTCCTGCTCTTAGTTATGCTGCTCTCCAGTATAGCCCT
TCTTTTTTTTTTCCCCTGTCTCGCATGTGTGTCTCTTCTGCTTAACGTAT
TTCTTTTTCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_h06.b1 MSMg01no045_h06.b1 CHROMAT_FILE:
MSMg01no045_h06.b1 PHD_FILE: MSMg01no045_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:25 2005
         (336 letters)



>mm_chr2_155383362_155384097
          Length = 736

 Score =  634 bits (328), Expect = 0.0
 Identities = 334/336 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gattgagttagaaagcttagattcctgcctttgttactaatgtgattttggaaaagggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gattgagttagaaagcttagattcctgcctttgttactaatgtgattttggaaaagggaa 477

                                                                       
Query: 61  atgagattgagatctgacaggtactagccacaaagacagcagcagctaacatttaagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atgagattgagatctgacaggtactagccacaaagacagcagcagctaacatttaagaac 417

                                                                       
Query: 121 actaactatgcagttccagactaacccttttgtatggattatctaatttaataaaatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actaactatgcagttccagactaacccttttgtatggattatctaatttaataaaatgta 357

                                                                       
Query: 181 ggagataaaagtactattttttaaagacttaaattacattcaaagacaataggtaacagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 ggagataaaagtactattttttaaagacttaaattacattcaaagacaataggtaacagc 297

                                                                       
Query: 241 ttatctgaagtctctgaaaatcagggtctgaatacaggcaggctgactccagagcctaca 300
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ttatctgaagtcacagaaaatcagggtctgaatacaggcaggctgactccagagcctaca 237

                                               
Query: 301 tgattagtctttaaggtacaaagactcttttttcta 336
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgattagtctttaaggtacaaagactcttttttcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no045_h06.g1 MSMg01no045_h06.g1 CHROMAT_FILE:
MSMg01no045_h06.g1 PHD_FILE: MSMg01no045_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:25 2005
         (336 letters)



>mm_chr2_155233553_155234288
          Length = 736

 Score =  629 bits (325), Expect = 0.0
 Identities = 331/333 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttctcctgggataccattttccttgaattacttcccataggagtattcacagacatcgg 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttctcctggtataccattttccttgaattacttcccataggagtattcacagacatcgg 260

                                                                       
Query: 61  cattctctgtttatcaggtgatggtggcacagaggcaggtccttgcaaaccaaccatgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctctgtttatcaggtgatggtggcacagaggcaggtccttgcaaaccaaccatgac 320

                                                                       
Query: 121 aggtacattgccactctgctgcacgggcattctctgggagtctgggttcagaggaccccg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtacattgccactctgctgcacgggcattctctgggagtctgggttcagaggaccccg 380

                                                                       
Query: 181 tggaggatggacattttgggagactggaagcctaatggatttaggatcttgctgcatcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggaggatggacattttgggagactggaagcctaatggatttaggatcttgctgcatcat 440

                                                                       
Query: 241 gatcatcatcatcatttgttgttgctgctgctgctgctgggactgtggctgactaggtgg 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagcatcatcatcatttgttgttgctgctgctgctgctgggactgtggctgactaggtgg 500

                                            
Query: 301 tggtggctgctgctgctgaggcagttgtggttg 333
           |||||||||||||||||||||||||||||||||
Sbjct: 501 tggtggctgctgctgctgaggcagttgtggttg 533


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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