MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-045H16
Chromosome	2 (Build37)
Map Location	71,938,793 - 71,939,312
singlet/doublet	singlet
Overlap gene	Rapgef4
Upstream gene	Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, LOC100040270
Downstream gene	B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cybrd1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73649 MGI:2654575
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dync1i2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13427 MGI:107750
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc25a12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78830 MGI:1926080
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667528 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667528
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 ESTs, 10 Proteins pseudo : _no_value

name	Hat1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107435 MGI:96013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040177 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 92 ESTs, 5 Proteins

name	Metapl1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66559 MGI:1913809
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040207 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040207
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Dlx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13390 MGI:94901
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlx1as (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:111970 MGI:1195983
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dlx2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13392 MGI:94902
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm1631 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:381371 MGI:2686477
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Itga6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16403 MGI:96605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pdk1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:228026 MGI:1926119
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rapgef4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56508 MGI:1917723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040270 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040270
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	B230120H23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:65964 MGI:2443258
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cdca7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66953 MGI:1914203
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383712 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins

name	LOC635960 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:635960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 46 ESTs, 20 Proteins

name	LOC100039928 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039928
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 9 Proteins pseudo : _no_value

name	6430710C18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76218 MGI:1923468
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Sp3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20687 MGI:1277166
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hspe1-ps5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:93752 MGI:1935166
definition	gene_synonym : Cpn10-rs6 note : heat shock protein 1 (chaperonin 10), pseudogene 5 pseudo : _no_value

name	Gtpbp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67059 MGI:1914309
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cybrd1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:115749413 GeneID:73649 MGI:2654575
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytochrome b reductase 1 transcript_id : NM_028593.1

name	Dync1i2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352824 GeneID:13427 MGI:107750
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein cytoplasmic 1 intermediate chain 2 transcript_id : NM_010064.2

name	Slc25a12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802710 GeneID:78830 MGI:1926080
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 25 (mitochondrial carrier, Aralar), member 12 transcript_id : NM_172436.3

name	Hat1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142385474 GeneID:107435 MGI:96013
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone aminotransferase 1 transcript_id : NM_026115.3

name	LOC100040177 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249828 GeneID:100040177
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 92 ESTs, 5 Proteins product : similar to nuclear protein-NHP2-like protein transcript_id : XM_001474344.1

name	Metapl1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370572 GeneID:66559 MGI:1913809
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : methionine aminopeptidase-like 1 transcript_id : NM_025633.2

name	LOC100040207 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249830 GeneID:100040207
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040207 transcript_id : XM_001474492.1

name	Dlx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753643 GeneID:13390 MGI:94901
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : distal-less homeobox 1 transcript_id : NM_010053.1

name	Dlx2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6753645 GeneID:13392 MGI:94902
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : distal-less homeobox 2 transcript_id : NM_010054.1

name	Gm1631 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41235763 GeneID:381371 MGI:2686477
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 1631, (NCBI) transcript_id : NM_201366.1

name	Itga6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352784 GeneID:16403 MGI:96605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : integrin alpha 6 transcript_id : NM_008397.3

name	Pdk1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377025 GeneID:228026 MGI:1926119
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pyruvate dehydrogenase kinase, isoenzyme 1 transcript_id : NM_172665.3

name	Rapgef4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9790086 GeneID:56508 MGI:1917723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rap guanine nucleotide exchange factor (GEF) 4 transcript_id : NM_019688.1

name	LOC100040270 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249832 GeneID:100040270
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : similar to pORF2 transcript_id : XM_001474603.1

name	B230120H23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802597 GeneID:65964 MGI:2443258
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230120H23 gene transcript_id : NM_178084.3

name	B230120H23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142375401 GeneID:65964 MGI:2443258
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA B230120H23 gene transcript_id : NM_023057.2

name	Cdca7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352638 GeneID:66953 MGI:1914203
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell division cycle associated 7 transcript_id : NM_025866.2

name	LOC383712 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94367032 GeneID:383712
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins product : similar to putative translation initiation factor A121/Sui1 transcript_id : XM_357202.5

name	LOC635960 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149249834 GeneID:635960
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 46 ESTs, 20 Proteins product : similar to adenylate kinase 4 transcript_id : XM_001474672.1

name	6430710C18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149249838 GeneID:76218 MGI:1923468
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : RIKEN cDNA 6430710C18 gene transcript_id : XM_001474689.1

name	Sp3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124001546 GeneID:20687 MGI:1277166
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : trans-acting transcription factor 3 transcript_id : NM_001018042.2

name	Gtpbp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:76677912 GeneID:67059 MGI:1914309
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : GTP-binding protein 9 (putative) transcript_id : NM_025942.2

name	Cybrd1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:115749414 GeneID:73649 MGI:2654575
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 product : cytochrome b reductase 1 protein_id : NP_082869.1

name	Dync1i2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753658 CCDS:CCDS16112.1 GeneID:13427 MGI:107750
definition	GO_component : GO:0005868 - cytoplasmic dynein complex [Evidence IEA]; GO:0030286 - dynein complex [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 product : dynein, cytoplasmic, intermediate chain 2 protein_id : NP_034194.1

name	Slc25a12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369581 CCDS:CCDS16113.1 GeneID:78830 MGI:1926080
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA] [Evidence TAS]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005215 - transporter activity [Evidence IEA] codon_start : 1 product : solute carrier family 25 (mitochondrial carrier, Aralar), member 12 protein_id : NP_766024.1

name	Hat1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28076885 CCDS:CCDS16114.1 GeneID:107435 MGI:96013
definition	codon_start : 1 note : histidine aminotransferase 1 product : histone aminotransferase 1 protein_id : NP_080391.2

name	LOC100040177 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249829 GeneID:100040177
definition	codon_start : 1 product : similar to nuclear protein-NHP2-like protein protein_id : XP_001474394.1

name	Metapl1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17975502 CCDS:CCDS16115.1 GeneID:66559 MGI:1913809
definition	GO_component : GO:0005739 - mitochondrion [Evidence ISS] GO_function : GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004239 - methionyl aminopeptidase activity [Evidence IEA] [Evidence ISS] GO_process : GO:0031365 - N-terminal protein amino acid modification [Evidence ISS]; GO:0018206 - peptidyl-methionine modification [Evidence ISS]; GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : methionine aminopeptidase-like 1 protein_id : NP_079909.1

name	LOC100040207 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249831 GeneID:100040207
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474542.1

name	Dlx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753644 CCDS:CCDS16116.1 GeneID:13390 MGI:94901
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0043524 - negative regulation of neuron apoptosis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : DII B product : distal-less homeobox 1 protein_id : NP_034183.1

name	Dlx2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753646 CCDS:CCDS16117.1 GeneID:13392 MGI:94902
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003727 - single-stranded RNA binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : DII A product : distal-less homeobox 2 protein_id : NP_034184.1

name	Gm1631 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41235764 GeneID:381371 MGI:2686477
definition	codon_start : 1 product : hypothetical protein LOC381371 protein_id : NP_958754.1

name	Itga6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982236 CCDS:CCDS16118.1 GeneID:16403 MGI:96605
definition	GO_component : GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0008305 - integrin complex [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA]; GO:0007160 - cell-matrix adhesion [Evidence IMP]; GO:0046847 - filopodium formation [Evidence IMP]; GO:0007229 - integrin-mediated signaling pathway [Evidence IEA]; GO:0050900 - leukocyte migration [Evidence IMP] [Evidence IGI]; GO:0042475 - odontogenesis (sensu Vertebrata) [Evidence IMP] codon_start : 1 product : integrin alpha 6 protein_id : NP_032423.2

name	Pdk1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625975 CCDS:CCDS16119.1 GeneID:228026 MGI:1926119
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 product : pyruvate dehydrogenase kinase, isoenzyme 1 protein_id : NP_766253.2

name	Rapgef4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790087 CCDS:CCDS16120.1 GeneID:56508 MGI:1917723
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0030552 - cAMP binding [Evidence IEA]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0017156 - calcium ion-dependent exocytosis [Evidence IDA]; GO:0019933 - cAMP-mediated signaling [Evidence IDA]; GO:0006887 - exocytosis [Evidence IEA]; GO:0030073 - insulin secretion [Evidence IDA]; GO:0017157 - regulation of exocytosis [Evidence IDA]; GO:0051056 - regulation of small GTPase mediated signal transduction [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : cAMP-dependent Rap1 guanine-nucleotide exchange factor; cAMP-GEFII product : cAMP-regulated guanine nucleotide exchange factor II protein_id : NP_062662.1

name	LOC100040270 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249833 GeneID:100040270
definition	codon_start : 1 product : similar to pORF2 protein_id : XP_001474653.1

name	B230120H23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12746436 GeneID:65964 MGI:2443258
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IDA] [Evidence IEA]; GO:0004709 - MAP kinase kinase kinase activity [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] [Evidence IDA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000075 - cell cycle checkpoint [Evidence ISS]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0043065 - positive regulation of apoptosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence IDA]; GO:0007243 - protein kinase cascade [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; MLK-like mitogen-activated protein triple kinase; sterile-alpha motif and leucine zipper containing kinase AZK product : leucine zipper- and sterile alpha motif-containing kinase isoform 1 protein_id : NP_075544.1

name	B230120H23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30017393 GeneID:65964 MGI:2443258
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IDA] [Evidence IEA]; GO:0004709 - MAP kinase kinase kinase activity [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA] [Evidence IDA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0007049 - cell cycle [Evidence IEA]; GO:0000075 - cell cycle checkpoint [Evidence ISS]; GO:0007010 - cytoskeleton organization and biogenesis [Evidence IDA]; GO:0043065 - positive regulation of apoptosis [Evidence ISS]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence IDA]; GO:0007243 - protein kinase cascade [Evidence IDA] codon_start : 1 exception : mismatches in translation note : isoform 2 is encoded by transcript variant 2; MLK-like mitogen-activated protein triple kinase; sterile-alpha motif and leucine zipper containing kinase AZK product : leucine zipper- and sterile alpha motif-containing kinase isoform 2 protein_id : NP_835185.1

name	Cdca7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313220 CCDS:CCDS16121.1 GeneID:66953 MGI:1914203
definition	GO_component : GO:0005634 - nucleus [Evidence ISS] [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0042127 - regulation of cell proliferation [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : cell division cycle associated 7 protein_id : NP_080142.1

name	LOC383712 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:63487010 GeneID:383712
definition	codon_start : 1 product : similar to putative translation initiation factor A121/Sui1 protein_id : XP_357202.3

name	LOC635960 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149249835 GeneID:635960
definition	codon_start : 1 product : similar to adenylate kinase 4 protein_id : XP_001474722.1

name	6430710C18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149249839 GeneID:76218 MGI:1923468
definition	codon_start : 1 product : hypothetical protein LOC76218 protein_id : XP_001474739.1

name	Sp3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:65301157 CCDS:CCDS16122.1 GeneID:20687 MGI:1277166
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0003682 - chromatin binding [Evidence IDA]; GO:0003677 - DNA binding [Evidence IDA] [Evidence ISS]; GO:0003690 - double-stranded DNA binding [Evidence IDA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030183 - B cell differentiation [Evidence IMP]; GO:0030218 - erythrocyte differentiation [Evidence IMP]; GO:0030851 - granulocyte differentiation [Evidence IMP]; GO:0030224 - monocyte differentiation [Evidence IMP]; GO:0001779 - natural killer cell differentiation [Evidence IMP]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence TAS]; GO:0030217 - T cell differentiation [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : trans-acting transcription factor 3 isoform 1 protein_id : NP_001018052.1

name	Gtpbp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313144 CCDS:CCDS16124.1 GeneID:67059 MGI:1914309
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1; GTP-binding protein PTD004 product : GTP-binding protein PTD004 isoform a protein_id : NP_080218.1

name	LOC100039928 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039928
definition	number : 2 pseudo : _no_value

name	LOC100039928 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039928
definition	number : 1 pseudo : _no_value

name	LOC667528 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149249825 GeneID:667528
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 69 ESTs, 10 Proteins product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_031697.1

name	Dlx1as (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:84872147 GeneID:111970 MGI:1195983
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : distal-less homeobox 1, antisense transcript_id : NR_002854.1

clone name	MSMg01-446I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-368J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374G12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322J03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512I17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364M05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-127F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538B12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265P18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472I24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-476B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-403O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-143K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-236G02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367L14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-359D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-208O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-159E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442A02
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-451J09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277K07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-336N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-182M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518F03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-045H16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-359H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-548J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-277P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368F19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-143E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416L15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-236K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-458P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-504B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078E20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342F08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-087N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-401H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169A20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-542H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-070M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-480C08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306E15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-153O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-099D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-419I05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046A05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046F14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-124E06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-069L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-177M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-316G17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-473G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-261O24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-149G24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-304K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-512P08
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-478N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-105G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-067L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-307L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-202O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330A04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143M23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315K11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309E09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298L24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-240P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-331C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248O17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036F06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199B16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-170D20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-202F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-004G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-199B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064N06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-032A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244H24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-322P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255I17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-263L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288G15
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-045H16.T7 (MSMg01no045_h16.b1)	MSMg01-045H16.TJ (MSMg01no045_h16.g1)
ACC	AG276103	AG276104
length	694	704
length of high quality (start - end)	522 (42 - 563)	315 (76 - 390)
definition	CHROMAT_FILE: MSMg01no045_h16.b1 PHD_FILE: MSMg01no045_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:26 2005	CHROMAT_FILE: MSMg01no045_h16.g1 PHD_FILE: MSMg01no045_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:26 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAACCGCGGAATT CTTTGTGGAGGCCCTCTGTGGTTGGAGAACCAACATGACAAGAGGTGACA ATGAAAACAATCTGAGCATCTTTTCGAGAGCCACTGTCCCTACTGAGGAA GTGCTGAGTACCACAGGACCCATTTTGCAGTTCTGTTCAGTTTTTTGCAG GTAACAGTAAGTGGTGGAGACAAGGCATCTCTCTCTATAGCTCAGCATGT CAGTCTGCTGCAGAAAGGGCTGAGGTGTCAGATAGATTGTCCTTGGCACA TGTAATTCAAAAGTACAATAGCAGCAGATCTGTCCTTCGGTGCGTTCCAA AAGTGACTCTATAGGAACTTACACCTGTCCCACCACTCGAAGGTAGAATA GAACTTTTAGCACCCCCCAGAATCCTCTTTGCACAAGAGGAGAGACTGAA AGTCAGCAATAAGGGTAGAGGCAGAGCCATAATTCTGCCCTCTGAGCTAA TGAGGTTCACACAGACAGCGGACTCTTTCCACTGTGGGCACAGGCACACT TAACAAGATGTGGCTTTCTATCACCCTCCACCCCAGCATTCCTTCCTCTC TGCCTCCCTCCCAGCACGTTCTGTCTAATAGGACTTAGATTGGTGCAGGG TGGGAGGCACTTCATTGTCCAAGCATGTGTTTAACATGGATTTC	CGATGACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXCTCTTGGATATCCTGTGGTCGCCCT GTGTAATGGAGATCCTGTAGCTTTTGGATCTGCAGGGCAGGGTCCTTCAC CTGCTCCAGCAATTCATAGATGGGGTAGATATTGGGGTGGACCAACTCAA ATCCCTGGATCTGGATCTGGGTGGTAGCTAGGTTGGTCAGCCTGCCAGCT TAGTTGCTCTCTCACCACCAGGGGGAGCTCTACAGTGCTGCCTAGGCCAG GAACAAGGGCCACGCTCTTTATTGCTGTAGCTGGCGAGAAGTGGGGTTGG CTCCACTCAGCCCTTGGATATCAATATGTCCCCAGGCAGCAGCCAGGACC AGGGAAGTTGCATGGCCTCCTTTTGGTAACATGTGTCATCGGCACAGACC CCAGACATGGACCTTGTCTGGCTGCAGTATGTGCTATAACATCACCATGG CCTCATGCGACAGTGCAGGCTACTCATATCGGGTTGCTTCTCTCCATCCT TAATGGCTTATTTCATCTTCTCTTCAATAATTCTATTCTGGGCTCCTGAT TCCTTTTCTTTCTCTCATTATTTACCTTGCTATTTGGACAGAGCCCCTTT TTATTCCCTCTCTTTTTCTCTACTTTTCATATGGTAACCTTCTATCTTAA CTCA
quality values	Open. Hide. 6 6 6 6 6 16 15 29 22 18 17 17 22 23 22 17 8 8 10 21 27 48 30 29 30 30 30 30 23 23 10 10 10 12 11 8 8 8 8 8 8 17 19 31 33 30 29 28 32 36 36 53 36 36 36 29 29 14 17 9 9 11 12 27 30 57 57 54 42 42 42 42 42 51 53 68 68 68 50 50 50 50 50 50 51 51 50 50 50 50 50 50 40 46 46 46 40 40 47 57 57 57 57 68 57 57 57 57 50 50 51 68 68 68 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 62 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 57 57 57 57 57 57 57 68 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 57 57 57 57 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 38 38 27 27 14 14 14 27 32 43 44 59 59 68 68 57 57 57 57 57 59 57 57 59 59 59 57 48 59 59 68 68 68 68 57 57 57 54 54 57 57 57 57 57 57 57 57 57 57 68 68 57 57 57 57 57 57 57 57 59 59 68 68 68 59 68 59 59 57 48 48 48 48 48 48 48 59 57 48 43 43 43 47 59 50 47 47 47 39 37 48 47 47 47 59 30 25 12 12 10 8 8 9 9 10 19 32 36 37 37 37 37 37 37 43 43 43 59 36 43 40 43 43 43 43 43 39 43 43 43 43 39 39 39 42 43 42 35 35 37 39 43 59 57 57 48 48 48 47 47 43 43 46 46 40 40 40 43 48 57 59 57 57 54 54 54 48 48 59 57 41 43 32 33 33 34 34 34 39 43 57 39 43 37 43 43 59 59 59 59 39 37 36 31 24 19 30 28 32 34 39 41 39 46 41 41 41 41 34 37 39 39 37 39 39 46 37 37 30 28 34 30 23 23 21 22 29 30 32 32 17 17 14 19 19 37 30 37 37 34 37 30 30 25 31 37 39 39 30 30 25 14 15 10 10 10 19 22 26 26 22 24 21 25 37 32 27 27 37 31 31 39 37 37 37 37 37 37 37 37 48 48 48 48 59 59 59 59 34 34 23 20 18 30 25 24 16 9 9 9 21 21 33 39 36 27 24 24 24 20 22 14 15 15 19 16 16 21 12 16 8 10 10 15 19 8 11 7 13 11 9 8 10 11 11 12 9 9 9 9 9 9 17 9 8 8 8 8 8 9 16 12 14 14 19 12 12 12 12 15 14 12 11 11 11 11 12 17 16 14 10 8 8 8 8 10 6 6 6 6 8 8 6	Open. Hide. 8 8 8 12 6 6 8 8 9 17 3 0 3 9 12 21 24 24 30 30 28 22 10 10 12 26 26 37 37 23 13 7 7 8 8 8 11 10 10 18 16 25 17 30 24 29 31 36 36 36 36 50 50 50 53 53 53 53 53 50 43 48 48 27 42 28 22 22 28 23 42 42 48 48 47 57 68 68 68 68 50 50 47 47 47 51 51 51 51 51 51 51 68 68 68 68 68 68 68 68 68 68 68 51 50 50 50 50 50 50 51 47 50 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 68 68 57 57 57 57 57 57 57 57 57 68 68 68 57 57 57 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 57 57 57 57 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 59 57 57 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 59 59 57 57 57 54 54 57 54 54 54 57 57 52 52 52 57 57 57 68 68 68 68 68 68 57 57 57 44 44 35 43 38 44 29 29 21 38 21 29 44 32 57 57 57 57 59 59 57 57 57 59 59 57 54 47 47 57 47 54 54 48 59 47 43 43 37 47 37 44 57 57 44 37 30 30 28 40 37 44 22 22 22 36 30 32 28 23 23 23 28 28 25 25 33 33 43 37 32 31 28 23 17 19 15 14 14 14 15 19 14 14 14 19 24 31 18 18 14 14 12 13 21 16 16 15 11 9 9 9 6 6 6 6 10 8 8 8 8 12 13 10 10 10 10 9 14 8 8 8 8 8 8 11 19 16 19 16 15 15 17 17 22 28 28 19 19 12 12 12 24 24 19 14 11 11 11 15 13 17 10 10 8 8 10 11 11 15 15 10 8 8 8 8 17 12 12 9 9 8 10 10 8 8 9 10 10 10 10 8 8 8 8 8 8 12 11 16 10 11 10 10 8 8 8 8 10 8 8 8 11 12 11 11 12 16 10 11 11 11 11 11 12 12 10 9 9 9 9 9 11 18 12 14 10 10 10 12 10 10 8 8 10 10 10 8 9 8 10 8 8 8 8 10 11 19 19 9 10 10 10 8 8 12 15 10 8 12 10 11 6 7 7 9 10 12 9 10 10 9 8 8 6 6 6 6 10 13 13 14 23 13 13 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 8 10 8 8 8 7 7 10 8 8 8 8 8 6 6 8 8 8 8 10 8 8 8 8 8 6 6 6 6 8 8 9 9 9 12 17 21 9 9 11 18 13 11 11 10 8 10 10 12 18 18 11 11 9 8 8 8 6 6 8 8 10 10 10 10 8 8 8 8 8 8 13 10 8 8 8 9 10 10 10 9 12 12 11 11 10 12 14 10 10

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no045_h16.b1 MSMg01no045_h16.b1 CHROMAT_FILE:
MSMg01no045_h16.b1 PHD_FILE: MSMg01no045_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:26 2005
         (522 letters)



>mm_chr2_71938589_71939512
          Length = 924

 Score =  913 bits (472), Expect = 0.0
 Identities = 508/520 (97%), Gaps = 2/520 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttgtggagg-ccctctgtggttggagaaccaacatgacaagaggtgacaatga 63
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattctttgtggaggatcctctgtggttggagaaccaacatgacaagaggtgacaatga 665

                                                                       
Query: 64  aaacaatctgagcatcttttcgagagccactgtccctactgaggaagtgctgagtaccac 123
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 664 aaacaatctgagcatcttttcgagagcctctgtccctactgaggaagtgctgagtaccac 605

                                                                       
Query: 124 aggacccattttgcagttctgttcagttttttgcaggtaacagtaagtggtggagacaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggacccattttgcagttctgttcagttttttgcaggtaacagtaagtggtggagacaag 545

                                                                       
Query: 184 gcatctctctctatagctcagcatgtcagtctgctgcagaaagggctgaggtgtcagata 243
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gcgtctctctctatagctcagcatgtcagtctgctgcagaaagggctgaggtgtcagata 485

                                                                       
Query: 244 gattgtccttggcacatgtaattcaaaagtacaatagcagcagatctgtccttcggtgcg 303
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 484 gattgtccttggcacatgtaattcaaaagtacgatagcagcagatctgtccttcggtgcg 425

                                                                       
Query: 304 ttccaaaagtgactctataggaacttacacctgtcccaccactcgaaggtagaatagaac 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttccaaaagtgactctataggaacttacacctgtcccaccactcgaaggtagaatagaac 365

                                                                       
Query: 364 ttttagcaccccccagaatcctctttgcacaagaggagagactgaaagtcagcaataagg 423
           |||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ttttaggagttcccagaatcctctttgcacaagaggagagactgaaagtcagcaataagg 305

                                                                       
Query: 424 gtagaggcagagccataattctgccctctgagctaatga-ggttcacacagacagcggac 482
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 304 gtagaggcagagccataattctgccctctgagctaatgagggttcacacagacagctgac 245

                                                   
Query: 483 tctttccactgtgggcacaggcacacttaacaagatgtgg 522
           ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 244 tctttccactgtgggcataggcacacttaacaagatgtgg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 924
Length adjustment: 10
Effective length of query: 512
Effective length of database: 914
Effective search space:   467968
Effective search space used:   467968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information