Query= MSMg01no045_i16.b1 MSMg01no045_i16.b1 CHROMAT_FILE:
MSMg01no045_i16.b1 PHD_FILE: MSMg01no045_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:31 2005
(506 letters)
>mm_chr2_161074874_161075782
Length = 909
Score = 891 bits (461), Expect = 0.0
Identities = 499/519 (96%), Gaps = 15/519 (2%)
Strand = Plus / Plus
Query: 1 cttaataaa-atacatgttaagagtttgtatttattgttattgctcccatgaaaaagttg 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaataaacatacatgttaagagtttgtatttattgttattgctcccatgaaaaagttg 260
Query: 60 cagaggcactaacggggttgggggtttaagaatcatgcatcagtcaggtcctgttgggag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggcactaacggggttgggggtttaagaatcatgcatcagtcaggtcctgttgggag 320
Query: 120 ccaatgacgttctgaggctgagtgattcccatgtgtgggaaggtgctatggcatggattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaatgacgttctgaggctgagtgattcccatgtgtgggaaggtgctatggcatggattt 380
Query: 180 gcttatttcttaaaggttcctgtgctgaagactcagtgttccggggtggaggcttttaag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttatttcttaaaggttcctgtgctgaagactcagtgttccggggtggaggcttttaag 440
Query: 240 ggagatgaaaagtatatatgaggaaactagtatctttttttttt------------tttt 287
|||| ||||||||||||||||||||||||||||| ||| ||||| ||||
Sbjct: 441 ggaggtgaaaagtatatatgaggaaactagtatc-tttctttttcttttttttttttttt 499
Query: 288 ttgctatagtggattggttttctttcttcgtataattttaatttttattgaaaatacatt 347
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 500 ttgctatagtggattggttttctttatttgtataattttaatttttattgaaaatacatt 559
Query: 348 tttcatataataagttctgatcacagtttcccctccttcaagcctgaacctccccatcca 407
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 560 tttcatataataagttctgatcacagtttcccctcctccaagcctgaacctccccatcca 619
Query: 408 cccaaatctataccttttcttcctttctctcattagaaaacagacaactaaaacaaaaca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cccaaatctataccttttcttcctttctctcattagaaaacagacaactaaaacaaaaca 679
Query: 468 caccccccaacctaaacaaaccaaaatactataacaaac 506
||||||| |||||||||||||||||||||||||||||||
Sbjct: 680 caccccc-aacctaaacaaaccaaaatactataacaaac 717
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 909
Length adjustment: 10
Effective length of query: 496
Effective length of database: 899
Effective search space: 445904
Effective search space used: 445904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_i16.g1 MSMg01no045_i16.g1 CHROMAT_FILE:
MSMg01no045_i16.g1 PHD_FILE: MSMg01no045_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:31 2005
(516 letters)
>mm_chr2_161151298_161152214
Length = 917
Score = 977 bits (505), Expect = 0.0
Identities = 514/517 (99%), Gaps = 1/517 (0%)
Strand = Plus / Minus
Query: 1 actcttcaagtaaatgctggcagatgtcaaccccacccttggaagcattcaagctggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 actcttcaagtaaatgctggcagatgtcaaccccacccttggaagcattcaagctggaag 658
Query: 61 gagcctgccaagattccttagaaatagagggatatagaagggaaaacgtctcaactgctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 gagcctgccaagattccttagaaatagagggatatagaagggaaaacgtctcaactgctt 598
Query: 121 tgtcagctacaggacaaagtagcagcagtctagacattgg-tccccaggttcaaacatca 179
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 597 tgtcagctacaggacaaagtagcagcagtctagacattggttccccaggttcaaacatca 538
Query: 180 atagcacatcagtaatcaccaacaggcaaagcttgtgatgtccgcactctttgggaacca 239
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 537 atagcacatcagtaatcaccaacaggcaaagctcgtgatgtctgcactctttgggaacca 478
Query: 240 ccactgatgagagacaccatgaactaagatagacaaggagaaaagcaactgatacccatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ccactgatgagagacaccatgaactaagatagacaaggagaaaagcaactgatacccatg 418
Query: 300 agagccaaaaaggctgttgtcaaggactagaaagattctcccataaacactgtctcatag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 agagccaaaaaggctgttgtcaaggactagaaagattctcccataaacactgtctcatag 358
Query: 360 gaagggaaggtacacagatttgcctaggcaaagcgtactgtgtgaaattttataatgacc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 gaagggaaggtacacagatttgcctaggcaaagcgtactgtgtgaaattttataatgacc 298
Query: 420 taaagttgtagccacaagcctcagaagcacacatgagggcttcgagatgctccttcccat 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 taaagttgtagccacaagcctcagaagcacacatgagggcttcgagatgctccttcccat 238
Query: 480 tctctattgaagactgtgccaacaatttaaaatgatg 516
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 tctctattgaagactgtgccaacaatttaaaatgatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 917
Length adjustment: 10
Effective length of query: 506
Effective length of database: 907
Effective search space: 458942
Effective search space used: 458942
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
