Query= MSMg01no045_j05.b1 MSMg01no045_j05.b1 CHROMAT_FILE:
MSMg01no045_j05.b1 PHD_FILE: MSMg01no045_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:34 2005
(652 letters)
>mm_chr2_18618630_18619678
Length = 1049
Score = 1029 bits (532), Expect = 0.0
Identities = 550/558 (98%), Gaps = 6/558 (1%)
Strand = Plus / Minus
Query: 4 ggaattcaataacctccatatgggatgctaggttttaaaagtcaagtagaaaaaatattt 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggaattcaataacctccatatgggatgctaggttttaaaagtcaagtagaaaaaatattt 494
Query: 64 aaaactataaagtctgtattcatgaacaatgcccattagtagaatttattatcctgttga 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 aaaactataaagtctgtattcatgaacaatgcccattagtagaatttattatcctgttga 434
Query: 124 aacacattataggatgcctatttcatatctgaacaagctagatggagtaaagaagttatc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 aacacattataggatgcctatttcatatctgaacaagctagatggagtaaagaagttatc 374
Query: 184 tttgtttttatcagtttcccccccccaaggccctttaaagttcaatgaagaaatataaga 243
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tttgtttttatcagt---ccccccccaaggccctttaaagttcaatgaagaaatataaga 317
Query: 244 taatgatcataatgtacccataagtggaattgttggtaatttaaatataacatatagtga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 taatgatcataatgtacccataagtggaattgttggtaatttaaatataacatatagtga 257
Query: 304 agagattactgtaactgaaaagaaagccattctatatttcctgacccatattctcttttt 363
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 256 agagattactgtaactgaaaagaaagccattctatatttcctgacccatattct--tttt 199
Query: 364 tttaattgcatatttttgttattacttttcaaatgttatcccctttccaggtcccccccc 423
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 tttaattggatatttttgttattacttttcaaatgttatcccctttccaggtcccccccc 139
Query: 424 c-agcccctaccctatcctccctccccctgcttctatgagggtgttcctccactcaccca 482
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ccagcccctgccctatcctccctccccctgcttctatgagggtgttcctccactcaccca 79
Query: 483 ccactcccacctccccaccctcagttcccctacactggggcatccagcaagccttcatag 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 ccactcccacctccccaccctcagttcccctacactggggcatccagcaagccttcatag 19
Query: 543 gactaaggacctctcctc 560
||||||||||||||||||
Sbjct: 18 gactaaggacctctcctc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1049
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1039
Effective search space: 667038
Effective search space used: 667038
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_j05.g1 MSMg01no045_j05.g1 CHROMAT_FILE:
MSMg01no045_j05.g1 PHD_FILE: MSMg01no045_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:34 2005
(575 letters)
>mm_chr2_18493104_18494079
Length = 976
Score = 938 bits (485), Expect = 0.0
Identities = 523/537 (97%), Gaps = 5/537 (0%)
Strand = Plus / Plus
Query: 1 cagaagg-aataacctggcacagtgaaagttctaaatatgggcaggcttgtgggatctgc 59
||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaggtgataacctggcacagtaaaagttctaaatatgggcaggcttgtgggatctgc 260
Query: 60 cttgtataaacatcgaagcttatttggattttaattacgtcactcttaaaaggctctctg 119
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 cttgtataaacatcgaagcttatttggattttaattacgtcattcttaaaaggctctctg 320
Query: 120 gcatttttaaattttaaagtgcttttaacaaaatactatgtgcccgtctttgaaaaccag 179
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 gcatttttaaattttaaagtgcttttaacaaaatactatgtgcccttctttgaaaaccag 380
Query: 180 acaatgaagaaaaagcttagagagcctcacagcaaagatactattcacttatttcctgat 239
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 acaatgaagaaaaagcttagagagccccacagcaaagatactattcacttatttcctgat 440
Query: 240 atagttaagagttactgttggatggtggtggcgcacacctttagtcccagcacttgggag 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagttaagagttactgtgggatggtggtggcgcacacctttagtcccagcacttgggag 500
Query: 300 gcagaggcaggtggatttctgagtttgaggccagccctgtctacagcctgaattccaaga 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcagaggcaggtggatttctgagtttgaggccagccctgtctacagcctgaattccaaga 560
Query: 360 caagcagggctacacagagaaaccccgtctcaaccctaaaaaaggcaagagggtattatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagcagggctacacagagaaaccccgtctcaaccctaaaaaaggcaagagggtattatt 620
Query: 420 tagtttaattgaggttttaactgtttttgttccaaactcaggctttttttctttctttct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagtttaattgaggttttaactgtttttgttccaaactcaggctttttttctttctttct 680
Query: 480 ttcttttttttt--aataaaacacacacacac--tatatctatatctatatctatat 532
|||||||||||| |||||||||||||||||| ||||| ||||| ||||| |||||
Sbjct: 681 ttctttttttttttaataaaacacacacacacactatatatatatatatatatatat 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 976
Length adjustment: 10
Effective length of query: 565
Effective length of database: 966
Effective search space: 545790
Effective search space used: 545790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
