Query= MSMg01no045_j13.b1 MSMg01no045_j13.b1 CHROMAT_FILE:
MSMg01no045_j13.b1 PHD_FILE: MSMg01no045_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:35 2005
(639 letters)
>mm_chr5_50539139_50540177
Length = 1039
Score = 1158 bits (599), Expect = 0.0
Identities = 626/635 (98%), Gaps = 1/635 (0%)
Strand = Plus / Minus
Query: 5 gaattcatgttaatatttccaattcacttctaataatacagctcttctctttaaatcatt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1033 gaattcatgttaatctttccaattcacttctaataatacagctcttctctttaaatcatt 974
Query: 65 aagtcataaatcgcatcttggtagtgttgcttttttttttccactgtaaattttgacttc 124
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 973 aagtcataaatcgcatcttggtagtgttgc-tttttttttccactgtaaattttgacttc 915
Query: 125 taataaaaacacacaagaatatcctcttgtaagaacaatttaaaatttaaatctaaagtt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 taataaaaacacacaagaatatcctcttgtaagaacaatttaaaatttaaatctaaagtt 855
Query: 185 aaaaaatatatattaccaaggttcaaatgttttggctgtttcttctgtattaacgaactg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 aaaaaatatatattaccaaggttcaaatgttttggctgtttcttctgtattaacgaactg 795
Query: 245 tggtatgcatgtgctgtcaagataacttctggattttcttagcactcctcatccaaggtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 tggtatgcatgtgctgtcaagataacttctggattttcttagcactcctcatccaaggtg 735
Query: 305 tctgtactgcatttatatgctataccagcttatgcacagtgttttctcatgcactctcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 tctgtactgcatttatatgctataccagcttatgcacagtgttttctcatgcactctcat 675
Query: 365 cgcgcacattgggattgggagcaatgttggaaaatttgtgtgtgtacatggaattttatg 424
|| | |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 674 cgtggacattgggattgggagtaatgttggaaaatttgtgtatgtacatggaactttatg 615
Query: 425 ctcattctctttttcttggagcttgctattataggagaaaaaaaaaaaagagaaatccac 484
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 614 ctcattctctttttcttggagcttgctattataggagaaaaaaaaaaaaaagaaatccac 555
Query: 485 tctgctaagtccaccatgaggaactaaaaccctatgcttgatccaaaattcaacagtttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tctgctaagtccaccatgaggaactaaaaccctatgcttgatccaaaattcaacagtttc 495
Query: 545 atttcaccatcagattgtccattgatattttacgcttttatttttccagcaatacaaacc 604
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 atttcaccatcagattgtccattgatattttacgcttttatttttccagcaatccaaacc 435
Query: 605 tccacgctttcacacagtcaatccattttgggtaa 639
|||||||||||||||||||||||||||||||||||
Sbjct: 434 tccacgctttcacacagtcaatccattttgggtaa 400
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_j13.g1 MSMg01no045_j13.g1 CHROMAT_FILE:
MSMg01no045_j13.g1 PHD_FILE: MSMg01no045_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:35 2005
(617 letters)
>mm_chr2_114434984_114436000
Length = 1017
Score = 1170 bits (605), Expect = 0.0
Identities = 614/617 (99%)
Strand = Plus / Plus
Query: 1 acatttaatacaggtaatgaaaaattactgcagagccagtcaccaaacaccaaagcaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttaatacaggtaatgaaaaattactgcagagccagtcaccaaacaccaaagcaaca 260
Query: 61 ttgatattgctgctgtagactaaacaaaagcaggaatcactgggtcttttaaacttttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatattgctgctgtagactaaacaaaagcaggaatcactgggtcttttaaacttttac 320
Query: 121 tagttttctagcctcaaacaggaaaagcagtttggaaatacagggctcattagagaagtc 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 321 tatttttctagcctcaaacaggaaaagcagtttggaaatacagggctcattaaagaagtc 380
Query: 181 ctttcaaccattgttagaactcctggattctgccttgtatgtggaattataagaagagat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaaccattgttagaactcctggattctgccttgtatgtggaattataagaagagat 440
Query: 241 ttagtggtcaatttcattatacttttcagtaggttataatcttatactgtaaaggggaca 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 ttagtggtcaatttcattatacttttcagtagtttataatcttatactgtaaaggggaca 500
Query: 301 gctgacagctgacattgcagagtttacataatatgtcaaatcactggccagcctaaaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgacagctgacattgcagagtttacataatatgtcaaatcactggccagcctaaaaca 560
Query: 361 caaagcttgaaataagacttgaattagataaagaaaaagtgaaactcatacagttccctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaagcttgaaataagacttgaattagataaagaaaaagtgaaactcatacagttccctt 620
Query: 421 ttctttctgcattcatattttatcttactttgaactcatggtttaaaataaatcaaaatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctttctgcattcatattttatcttactttgaactcatggtttaaaataaatcaaaatt 680
Query: 481 atttaatttaaaataataccagtattaagtctccaaaatatctaaacaaaaataaatctc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atttaatttaaaataataccagtattaagtctccaaaatatctaaacaaaaataaatctc 740
Query: 541 taaaaatgttttaaaaaaataattcagagttaaaaaaacagtatctccatactttcctac 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaaatgttttaaaaaaataattcagagttaaaaaaacagtatctccatactttcctac 800
Query: 601 attaacaaggggcaggt 617
|||||||||||||||||
Sbjct: 801 attaacaaggggcaggt 817
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1017
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1007
Effective search space: 611249
Effective search space used: 611249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
