BAC Information

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BAC

Clone NameMSMg01-045K01
Chromosome2 (Build37)
Map Location 161,667,267 - 161,667,396
singlet/doubletsinglet
Overlap genePtprt
Upstream geneZhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045K01.T7 (MSMg01no045_k01.b1)MSMg01-045K01.TJ (MSMg01no045_k01.g1)
ACCAG276211AG276212
length774700
length of high quality
(start - end)
262 (152 - 413)130 (51 - 180)
definitionCHROMAT_FILE: MSMg01no045_k01.b1 PHD_FILE: MSMg01no045_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:37 2005CHROMAT_FILE: MSMg01no045_k01.g1 PHD_FILE: MSMg01no045_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNCAAACTGCGTCNCNATCTATAAXXXXXXXXXXXX
XXXXXXXXXXXXXTTCATACGGATCCGCGGAATTCATTTTCTTTCTGATA
TGTGTGCGAGTTAGTTTTATGTTAACTTGACAGGAGATAAAGTCATCTGA
GAAGAGGGAACCACAATTAAGAAACTCCTTTTATTAGACAGGGCTGTAGG
CAAGCCTGTAGGGTATTTTTTTTAATTAGTCATTAATGAGGGAGGACCAA
GTCCCTTACAGGTGCTGCCATCCATGGGGTTGTGGTTCTAGGTACTATAC
CAAAGCAGGCTGAGACAGCCATGAGGAACAAACCAGTAAGCAGCACCCCT
CCTTGGTCTCTGCATCAGCTTTGGCCCCCAATGTCCTGCCCATTTTGGGT
TCCTGCCCTGACTTCCTTCACTGATGAACTATAACGCGGAAATTTTAGCC
AAATCACCCCCTTTCCTCTCCAAGTTGTTTTGGCCATGGCATTTCTTCCA
ACCACTATGAAACCCGGATTAAGAGAACGTGGCTGGTATAATTTTCTCAA
ATCCTACCTTAGAAGGCTAGGGTTGATCGTAACTTATCCATCTAAAATGA
ATCGGGCTTAATCAATGCAACCGCCCGTAGTTTTTCCCTCCACGTATATT
CTTTACATTATTATTCTTCCCTTACATTATATGCGGCTCTCTAGCACTTG
AATTAAGTTTGGCGACCTTTTCGG
GGCTGGCCGTCCCCACCCCGTCGAACTANAGAAGGATTTTTGGAACTCAA
ACTAAACATGGACTCATTCATCACATACTTATGGAACATGGGCTGGCGCA
GGGTCCGTGGTAATAGCTGGAAAGACAAGATTAATAAGCTGTACTTCCTC
TTTCCTAGCCATTCACATCCCTGTGGAGCAGATAGAGCCATAAACCAATA
TTTATACCAATGACATGTCACACAAACTAACAGAAATATGTACAAAGTTG
TCAGGACAAAGGGGTAATGAGAAGAGGCAGGGAGGCATACAGGAGGTTAG
ATGGTGCTCAGGCATGTGGCCCCATCCTTCGAGATGAATCTGGAGGACGC
TTAAGGGCAGACCAGGCGAGACATTGCTTCCAAGATAGGAAGCTGCTAAC
ATTGTATGGGGGATATTTGCATTATCATTACCCATTAACTCCTTTGAGGG
TATTGGGCCCCTCCTTAGCCTGTCCAGCACTATGCATCATCCTACCTTTA
ACACGATAATGAATTCCTTTTCCCCTAACAGACCGATCTCAAATCCCCCC
CAACATAGTTTCGCACCAACCGGCGCCCCCCTAAATAAACCGCCTATTTA
CCCCCGGTCAGCTTTACCCTTTGGTTTCTCCCTTCTACCGCCCCTTTTAG
GCTTTTCCTTTCATTCTCCACTCCATTTCGTTCCCCCCTTTCCTTCCCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_k01.g1 MSMg01no045_k01.g1 CHROMAT_FILE:
MSMg01no045_k01.g1 PHD_FILE: MSMg01no045_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:37 2005
         (130 letters)



>mm_chr2_161667067_161667596
          Length = 530

 Score =  244 bits (126), Expect = 2e-69
 Identities = 129/130 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actaaacatggactcattcatcacatacttatggaacatgggctggcgcagggtccgtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 actaaacatggactcattcatcacatacttatggaacatgggctggcgcagggtcagtgg 260

                                                                       
Query: 61  taatagctggaaagacaagattaataagctgtacttcctctttcctagccattcacatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatagctggaaagacaagattaataagctgtacttcctctttcctagccattcacatcc 320

                     
Query: 121 ctgtggagca 130
           ||||||||||
Sbjct: 321 ctgtggagca 330


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 130
Length of database: 530
Length adjustment: 8
Effective length of query: 122
Effective length of database: 522
Effective search space:    63684
Effective search space used:    63684
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)