BAC Information

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BAC

Clone NameMSMg01-045O12
Chromosome2 (Build37)
Map Location 130,162,375 - 130,162,887
singlet/doubletsinglet
Overlap geneEbf4
Upstream geneIl1b, OTTMUSG00000015529, LOC668896, F830045P16Rik, Sirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b
Downstream geneLOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4, Adam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045O12.T7 (MSMg01no045_o12.b1)MSMg01-045O12.TJ (MSMg01no045_o12.g1)
ACCAG276417AG276418
length682666
length of high quality
(start - end)
629 (42 - 670)513 (56 - 568)
definitionCHROMAT_FILE: MSMg01no045_o12.b1 PHD_FILE: MSMg01no045_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:58 2005CHROMAT_FILE: MSMg01no045_o12.g1 PHD_FILE: MSMg01no045_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAATTTGCGGCGCTAAACGATCACTATCCCAAGAGGATCCGCGGAATT
CTATAATTCCTTAATTCATCATGAAAGTTCATCTTAATGTTGATCTGTAG
GAAGTCTGCCCAATAGGGTGGGCTGATGCCCAGGAATCATTAGCCTATGT
AATAGTGACAGAAAAAGGCATATCAGTAGTAAGAAGCAATCCTGGGACAA
AATCTCTGAAGGCCCTACAAGTCAGAGCTTGCCCATCTCAGCCATGCAGA
GTGGTGGGCCAACTCCAGTAGAGTTACTTGCATGCCTTTAGCCGTTTCTA
GATGGCCCCTGACAACACTGAAACTCTTTATAGAGTACATGAGACATTGT
CCAAGATAGGCTCTATAGACTATATGTGACATCTCAAGCGTCTAGGGGAG
AATCTGGTGTGGTCTCAGTCATACAGTTATCACAAAGGTCACCAGGATAT
TAACCACCTCTGTTCCCAGCCTTCTGATCAGAAAGCAGATGTCTTAGTTA
GGGTTTTACTGCTGTGAACAGACACCATGACCAAGGCAAGTCTTATAAAA
AACAACATTTAATTGGGGCTGGCTTACAGGTGCAGAGGTTTAGTCTATTA
TCATCAAGGTGGGAGCATGGCAGTATCCAGGCAGGCACGGCGCATGAGGA
GCTGAGAGTTCTATGTCTTCATCCAAAGGCTG
CCTGGCGGCGCCTGTTCAAAACXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGCCGTGGTGACAAGTGGGGGTTGGGGGCATGGCTAGGAGGGAAT
GCTGAGACAGGGTGGACACAGAGCAATCCTCTCGCCAGCAGAGCTGTATA
CGTCTGTGTCCTGTTCCACACAGCAAACCAGTGGGGTTTGTCATGCCCTG
TGTTCATGAGTCTCACTGGAAGCTAAAGAGTTAATAGACCCTTCACCATG
GTTCTCAGCTAACGTACTGGGCTAAGGATTTCTTGTGTGGATGTTCATTA
GTGCTTGATCCAATCCCTTACTCTGGGTGCAATGCAATGAATGTCTCACC
ACCCCCAAAAATGTATAGCCACAGTCTACACAACCTGTAAATGTTTTGTG
ACCCTACTTTGAAAAGGGAGCCTAGTTTTTAACAGCTGTGCCATCTCTCC
AATCCTATAGATGCTATTAAATTAGGGATCTTGAGATGACATTACCCTGA
ATTATCTGATTGGTTCCTCCATTCAACGGCAAGGATCCTTGTAACACTAA
GGCAGAAGTGACAGAAGACAGAAGGGTCCTGTGACAGCCATGGTAGCAGC
AAAGCCACTGTAGTACTGGCAGACACCTAGAACTTCAACAGACTAGCGGC
AACCTGGTTTTGCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_o12.g1 MSMg01no045_o12.g1 CHROMAT_FILE:
MSMg01no045_o12.g1 PHD_FILE: MSMg01no045_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:58 2005
         (513 letters)



>mm_chr2_130162288_130163200
          Length = 913

 Score =  977 bits (505), Expect = 0.0
 Identities = 511/513 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agccgtggtgacaagtgggggttgggggcatggctaggagggaatgctgagacagggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 agccgtggtgacaagtgggggttgggggcatggctaggagggaatgctgagacagggtgg 541

                                                                       
Query: 61  acacagagcaatcctctcgccagcagagctgtatacgtctgtgtcctgttccacacagca 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acacagagcaatcctctcaccagcagagctgtatacgtctgtgtcctgttccacacagca 481

                                                                       
Query: 121 aaccagtggggtttgtcatgccctgtgttcatgagtctcactggaagctaaagagttaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 aaccagtggggtttgtcatgccctgtgttcatgagtctcactggaagctaaagagttaat 421

                                                                       
Query: 181 agacccttcaccatggttctcagctaacgtactgggctaaggatttcttgtgtggatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 agacccttcaccatggttctcagctaacgtactgggctaaggatttcttgtgtggatgtt 361

                                                                       
Query: 241 cattagtgcttgatccaatcccttactctgggtgcaatgcaatgaatgtctcaccacccc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cattagtgcttgatccaatcccttactctgggtgcaatgcaatgaatgtctcaccacccc 301

                                                                       
Query: 301 caaaaatgtatagccacagtctacacaacctgtaaatgttttgtgaccctactttgaaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 caaaaatgtatagccacagtctacacaacctgtaaatgttttgtgaccctactttgaaaa 241

                                                                       
Query: 361 gggagcctagtttttaacagctgtgccatctctccaatcctatagatgctattaaattag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gggagcctagtttttaacagctgtgccatctctccaatcctatagatgctattaaattag 181

                                                                       
Query: 421 ggatcttgagatgacattaccctgaattatctgattggttcctccattcaacggcaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 180 ggatcttgagatgacattaccctgaattatctgattggttcctccattcaatggcaagga 121

                                            
Query: 481 tccttgtaacactaaggcagaagtgacagaaga 513
           |||||||||||||||||||||||||||||||||
Sbjct: 120 tccttgtaacactaaggcagaagtgacagaaga 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)