BAC Information

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BAC

Clone NameMSMg01-046F14
Chromosome2 (Build37)
Map Location 72,650,111 - 72,749,691
singlet/doubletdoublet
Overlap genenone
Upstream geneItga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
Downstream geneSp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1, Atf2, Atp5g3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046F14.T7 (MSMg01no046_f14.b1)MSMg01-046F14.TJ (MSMg01no046_f14.g1)
ACCAG276747AG276748
length688689
length of high quality
(start - end)		359 (41 - 399)610 (74 - 683)
definitionCHROMAT_FILE: MSMg01no046_f14.b1 PHD_FILE: MSMg01no046_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:29 2005CHROMAT_FILE: MSMg01no046_f14.g1 PHD_FILE: MSMg01no046_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,749,339 - 72,749,691)(72,650,111 - 72,650,710)
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXCTATTTCGAGAGAATCCGCGGAAT
TCCTTCTCTTACTCATATTCAGCAAATGAAGGAAGATTGTCACCCAGCAG
CTGTCTGCAGCTCCAGCTGTGGAGGTCAGTTTTGAGGGAGTGTCATAAGA
CCCACTGACCATGTCTGTGGTGGGCTCTCTGTCTCCTGAGATAAGACCGT
TGCTCTTATCTCTGTTGGGTGATATTCCTCTATGAGACTTGCATTTTGGG
TTTGTTTGATAAGTTCTCATATCTGATAAGCAGACATTATCTAAAATCTG
ATAAGCAGACATTTCAGATTCTGATCCGGATGTGTAGTGTGTGAGCATTC
CCATTACAAGGTGGACATTTTCCCTCCAAAAGTCACCGTTGGCTTCAGTA
AATAGCTGGTCTTCCCACAAGCATTTGAAGTGGGGGTTCAGGATTGCAAG
CCCTGGTGTGATTAAGGGTGGGGCTTGTCTACTTACTGTAGAAAGCCACA
GCATGTTCCCATTGGAGAATTATGTCCAAACTTGTGGCTCCTACAACATA
CAATGTTTTTCTAAGATAATTCTTATTATAACTATTCCAAAGGTGATGAG
AGATAAGGAGCCTTTGAATGTATTAAAAAACAAGCCCCCAAAACAAAACA
AAACGAAACAATAAAACCCAAAATATCAGGGGTTGCGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTGCCTCTCTGCAGAGTCTGGTACG
GAGGAAATATTGCTTGTTTAGAGCGATTTGACCTTAAGACTTCACAGAAT
AAGAAGATGCCAGGAGGTCGCCAGAAAGAAAATGCCCTTTCAGATTTTTT
ACTACCCATTCTGAAAAGGGCCAAGCAAAGCAAGTTTAAGGTAGCAGTAA
TTTGAATCTATTTTTCTCCTGGGAATCGGCTCACTTGTACCATTCTCCAT
CATACTATGGCCTTACCTCAGGTAAAAATATTGTGGCTCTGAAAACAAAA
CTTGGGGCAAGAAAGGATGGAGATCTAGAAGGATTATAGTTTTAAAACCC
CAAAGCCTTTTTCCTCTTAAGCACAAATCCCAATTAACATTTCAAGAACA
CTCCAGTACAATCCCTCCTAAAACCAAACCTGGAGAGACAGCCCAAAGCA
GCAAGAGATGTTCCCATTGCCAATCCAAAAGGGATTAGGAACAAACTCAG
GGGAAAATCTCTGTGGTGACAGACTGCACCGGCACCTTCACCTTTAAGTC
CCAGTGAGACACTCCTGGTGAGAGAACAGCAGGCAGTGTCATAAGATAGA
CACAGTCTGAACGTCAAAAAAAAAAAAAAAAAAAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_f14.b1 MSMg01no046_f14.b1 CHROMAT_FILE:
MSMg01no046_f14.b1 PHD_FILE: MSMg01no046_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:29 2005
         (359 letters)



>mm_chr2_72749133_72749891
          Length = 759

 Score =  629 bits (325), Expect = 0.0
 Identities = 346/353 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccttctcttactcatattcagcaaatgaaggaagattgtcacccagcagctgtct 66
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gaattccttctcggactcatattcagcaaatgaaggaagattgtcacccagcagctgtct 500

                                                                       
Query: 67  gcagctccagctgtggaggtcagttttgagggagtgtcataagacccactgaccatgtct 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gcagctccagctgtggaggtcagttttgagggagtgtcataagacccactgaccatgtct 440

                                                                       
Query: 127 gtggtgggctctctgtctcctgagataagaccgttgctcttatctctgttgggtgatatt 186
           |||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||| ||
Sbjct: 439 gtggtgggctctctgtctcccgagataagaccattgctcttatctctggtgggtgatgtt 380

                                                                       
Query: 187 cctctatgagacttgcattttgggtttgtttgataagttctcatatctgataagcagaca 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctctatgagacttgcattttgggtttgtttgataagttctcatatctgataagcagaca 320

                                                                       
Query: 247 ttatctaaaatctgataagcagacatttcagattctgatccggatgtgtagtgtgtgagc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttatctaaaatctgataagcagacatttcagattctgatccggatgtgtagtgtgtgagc 260

                                                                
Query: 307 attcccattacaaggtggacattttccctccaaaagtcaccgttggcttcagt 359
           |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 259 attcccattacaaggtggacattttccctccaaaagtcactgttggcttcagt 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no046_f14.g1 MSMg01no046_f14.g1 CHROMAT_FILE:
MSMg01no046_f14.g1 PHD_FILE: MSMg01no046_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:29 2005
         (610 letters)



>mm_chr2_72649911_72650920
          Length = 1010

 Score = 1067 bits (552), Expect = 0.0
 Identities = 588/600 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctgcctctctgcagagtctggtacggaggaaatattgcttgtttagagcgatttgacc 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 tcctgcctctctgcagagtctggtacggaggaaagattgcttgtttagagcgatttgacc 260

                                                                       
Query: 61  ttaagacttcacagaataagaagatgccaggaggtcgccagaaagaaaatgccctttcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 ttaagacttcacagaataagaagatgccaggaggtcgccagaaagaaaatgcccttttag 320

                                                                       
Query: 121 attttttactacccattctgaaaagggccaagcaaagcaagtttaaggtagcagtaattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 attttttactacccattctgaaaagggccaagcaaagcaagtttaaggtggcagtaattt 380

                                                                       
Query: 181 gaatctatttttctcctgggaatcggctcacttgtaccattctccatcatactatggcct 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 381 gaatctatttttctcctgggaatcggctcacttgtaccattctccatcgtactatggtct 440

                                                                       
Query: 241 tacctcaggtaaaaatattgtggctctgaaaacaaaacttggggcaagaaaggatggaga 300
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctcaggtaaaaatattgcggctctgaaaacaaaacttggggcaagaaaggatggaga 500

                                                                       
Query: 301 tctagaaggattatagttttaaaaccccaaagcctttttcctcttaagcacaaatcccaa 360
            ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctagaaggattacggttttaaaaccccaaagcctttttcctcttaagcacaaatcccaa 560

                                                                       
Query: 361 ttaacatttcaagaacactccagtacaatccctcctaaaaccaaacctggagagacagcc 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaacatttaaagaacactccagtacaatccctcctaaaaccaaacctggagagacagcc 620

                                                                       
Query: 421 caaagcagcaagagatgttcccattgccaatccaaaagggattaggaacaaactcagggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 621 caaagcagcaagagatgttcccattgccaatccaaaagggattaggaacaaactcaggga 680

                                                                       
Query: 481 aaaatctctgtggtgacagactgcaccggcaccttcacctttaagtcccagtgagacact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaatctctgtggtgacagactgcaccggcaccttcacctttaagtcccagtgagacact 740

                                                                       
Query: 541 cctggtgagagaacagcaggcagtgtcataagatagacacagtctgaacgtcaaaaaaaa 600
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctggtgagagaacggcaggcagtgtcataagatagacacagtctgaacgtcaaaaaaaa 800


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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