BAC Information

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BAC

Clone NameMSMg01-046G15
Chromosome2 (Build37)
Map Location 162,674,312 - 162,674,728
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696
Downstream geneLOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046G15.T7 (MSMg01no046_g15.b1)MSMg01-046G15.TJ (MSMg01no046_g15.g1)
ACCAG276797AG276798
length827664
length of high quality
(start - end)
---421 (55 - 475)
definitionCHROMAT_FILE: MSMg01no046_g15.b1 PHD_FILE: MSMg01no046_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:34 2005CHROMAT_FILE: MSMg01no046_g15.g1 PHD_FILE: MSMg01no046_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:06:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AACTCCCTTTTTTCANAANATCCNNCNNAATTCCCCAANTATTCCCCCNN
CTATATNNANNTCAAATNNNNAAAANCANNNNNNCANCTTNNCCTATNNN
ANCCANNCANCACANNNNNAAANNATCTCAACTNNTCTANNNATTTNNNA
TCANNNNCCTTTNNNAACCTCANAANACCCCCTACCCCTCTCACANNNNA
TANNNTNCAAATTNNTTCATCNNAAANAACCCCANNTTTTNATTTNCTTT
NNAACCCTNNNNCTATNNNAAATCTTAAAACTTTAAACCCCTNNAATTCC
CCANNAAANTCTTTAAAANCCCCCTTCTCCCCCACCTCNCNNNNCACCCC
CAAACCCCATTCCCCCTTTTCCCCACAAATTCCCCCCCCNCCCAAAACCC
CCCCCCCNNCCAAAAAACACCTTCCTCCCCAACCAACAANAAACCCCCCC
TCCCNCCTTCCCCCCCTCCCCCCCCCCCCTTTCCCCCCCCCACCCCTCTC
TACNAATTTTTCCCCCCCCACAAANNACCCCACCCCCCCCCCCTCCCTTC
TCCCCCCCATCTCNCCCCTCCCCCNCCCCCCCCCNTCCNNCNCTTCCCCC
CCACCCCCCCCCCCCCCCCCCCCCCCTCTCCCCCTTCTCTTCCCTCCCCT
CTTCTTTTTTTTATTTTATTTTCTTTATTNNCCCNTTTTCNNNNTTCTTT
TCTCTNNNNNNNNNCNNCNNNCNNNNNNCNNNNCCCCNCNNCCTNTCCCA
NCCCCACCCATCCCCCCCCCNCCCTTCCCTCCCCCNNCCCTCTCCTTCCT
TTCTTATTTTTATTTTTTTTTTATATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTCTTCTAGAGCCTTAGCTGGAGTGTGGCTCAGTTACTAACACTTGG
ACTTCCAACCTGTGGCATGGTAAATTCTCTTGGTAAATAGCCTCAAGTCT
AAGAGGTTCTGACCTCCGAAATGACTAGTTATAAGCACTTCTGGATAAGG
GACAAGTCATCTAAACCAACTCTTCGGTAAGTTCTTCAGGTTAACAAGTG
AACTGGGTGTTTACTGCTCCTCTTTAGTGTTCCGTCCTTGCTTTGTCTAA
TATTGCTCCCTACCCCCATGTGAGATACTGTTATAGTTTGTATATGCTTG
ACCCTATTAGAAGGTGTGACACTGTTGGAGTAGGTGTGGCCTTGTTGGAG
TGGGTGTGTCACTGTGGGTGTGGGCTTTAAGACCCTCATCCTAGCTGCCT
GGAAGCCAGTCTTCTCCTAGCAGCCTTCAGATGAAGATGTAGAACTCTCA
GCTCCTCCTGCACCATGTTTACCTGAATGCTGCCATGTTCCCACCTTGAT
GATAATGGACTAAACCTCTGAGCCTGTTAGCTAGCCTTCATTAAATGTTG
TCCCTATTAAAAATAAAAAAAAAAAAATTGCCTTGGCCATGGTGTTCATT
CACAGCAAGAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_g15.g1 MSMg01no046_g15.g1 CHROMAT_FILE:
MSMg01no046_g15.g1 PHD_FILE: MSMg01no046_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:06:34 2005
         (421 letters)



>mm_chr2_162674109_162674928
          Length = 820

 Score =  746 bits (386), Expect = 0.0
 Identities = 410/418 (98%), Gaps = 1/418 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   tctagagccttagctggagtgtggctcagttactaacacttggacttccaacctgtggca 63
           ||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 204 tctagagcc-taactggagtgtggctcagttactaacacttggactcccaacctgtggca 262

                                                                       
Query: 64  tggtaaattctcttggtaaatagcctcaagtctaagaggttctgacctccgaaatgacta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggtaaattctcttggtaaatagcctcaagtctaagaggttctgacctccgaaatgacta 322

                                                                       
Query: 124 gttataagcacttctggataagggacaagtcatctaaaccaactcttcggtaagttcttc 183
           |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 323 gttataagcacttctggataagggacaagtcatctaaaacaactcttaggtaagttcttc 382

                                                                       
Query: 184 aggttaacaagtgaactgggtgtttactgctcctctttagtgttccgtccttgctttgtc 243
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 aggttaacaagtgaactgggtgtttactgctcctctttagtgttctgtccttgctttgtc 442

                                                                       
Query: 244 taatattgctccctacccccatgtgagatactgttatagtttgtatatgcttgaccctat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taatattgctccctacccccatgtgagatactgttatagtttgtatatgcttgaccctat 502

                                                                       
Query: 304 tagaaggtgtgacactgttggagtaggtgtggccttgttggagtgggtgtgtcactgtgg 363
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 tagaaggtgtgacactgttggagtaggtgtggccttgttggagtgggcgtgtcactgtgg 562

                                                                     
Query: 364 gtgtgggctttaagaccctcatcctagctgcctggaagccagtcttctcctagcagcc 421
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtatgggctttaagaccctcatcctagctgcctggaagccagtcttctcctagcagcc 620


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 820
Length adjustment: 9
Effective length of query: 412
Effective length of database: 811
Effective search space:   334132
Effective search space used:   334132
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)