CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCACTTGTTTACTCGCCTTACCTGAGCATGTGCCTCTTTCTTCGTTCTT
AAACCCACCCATGCAAACACTTACAAGTTTTTTTATAGAATTATGTGTTT
ATGTTTTCTAGAGGATTACAAATATAGACACCAATACATGATTGCAAATA
ATCTATTTTTTTTATTGAGAACAATTATTTTGAGACACAAACATGTTTTA
TATAGCTTTTTAACAAGGATTATTATTTCTATGTATTTACTCAGGTATCC
ATTAACAAATTACCAGGTGAATAAATTGTGGCATATTTATGTAATTGAAT
ATGGAAAGACAGTGAAAACAATAAATTGTTAATATGATAAATATGAATTG
ATTAAGGTAAATAATTATTTTTCTAAAAAATAAAAAGTTTTAAAATGGCA
TAATTATTATTATATAAAGTCTAGAAGCAGGAAAGAAAAAGATAAATTGT
CAAGGAATAACAGTGAATCTCATGAAAGTAAAAAATACTGTCCAATATCA
TAATTGGTGGTTTATCCTAGTTTATATACTTATTAAAATTTCAGGAATTT
TATACTACTTAAAGTCTATGGATTTAGTGATTACTTAGAAATATACTTCC
ATAATTGTAGTGGCATATTTTTCAGGTCCACAGAGAGATATTGCTCATA

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCAAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATGAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAAA
ACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGCCCTATTTATAATAGCCAGGAGCTGG
AAAGAACCCAGATTCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATCTCCTAN

Query= MSMg01no046_m18.b1 MSMg01no046_m18.b1 CHROMAT_FILE:
MSMg01no046_m18.b1 PHD_FILE: MSMg01no046_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:02 2005
         (542 letters)



>mm_chr2_67124602_67125542
          Length = 941

 Score =  924 bits (478), Expect = 0.0
 Identities = 512/526 (97%), Gaps = 7/526 (1%)
 Strand = Plus / Plus

                                                                       
Query: 17  tttactcgccttacctgagcatgtgcctctttcttcgttcttaaacccacccatgcaaac 76
           |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 218 tttact-gccttacctgagcatgtgcctctttcttcgctcttaaacccacccatgcaacc 276

                                                                       
Query: 77  acttacaagtttttttatagaattatgtgtttatgttttctagaggattacaaatataga 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 acttacaagtttttttatagaattatgtgtttatgttttctagaggattacaaatataga 336

                                                                       
Query: 137 caccaatacatgattgcaaataatctattttttttattgagaacaattattttgagacac 196
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 337 caccaatacatgattgcaaataatcta-tttttttattgagaacaattattttgagacac 395

                                                                       
Query: 197 aaacatgttttatatagctttttaacaaggattattatttctatgtatttactcaggtat 256
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaacatgttttatatatctttttaacaaggattattatttctatgtatttactcaggtat 455

                                                                       
Query: 257 ccattaacaaattaccaggtgaataaattgtggcatatttatgtaattgaatatggaaag 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ccattaacaaattaccaggtgaataaattgtggcatatttatgtaattgaatatggaaag 515

                                                                       
Query: 317 acagtgaaaacaataaattgttaatatgataaatatgaattgattaaggtaaataattat 376
           |||||||||||||||||||||     ||||||||||||||||||||| ||| ||||||||
Sbjct: 516 acagtgaaaacaataaattgt-----tgataaatatgaattgattaatgtatataattat 570

                                                                       
Query: 377 ttttctaaaaaataaaaagttttaaaatggcataattattattatataaagtctagaagc 436
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 571 ttttctaaaaaataaaaagttttaaaaaggcataattattattatataaagtctagaaga 630

                                                                       
Query: 437 aggaaagaaaaagataaattgtcaaggaataacagtgaatctcatgaaagtaaaaaatac 496
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aggaaagaaaaagataaattgtcaaggaataacagtgaatctcatgaaagtaaaaaatac 690

                                                         
Query: 497 tgtccaatatcataattggtggtttatcctagtttatatacttatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tgtccaatatcataattggtggtttatcctagtttatatacttatt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 941
Length adjustment: 10
Effective length of query: 532
Effective length of database: 931
Effective search space:   495292
Effective search space used:   495292
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)