BAC Information

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BAC

Clone NameMSMg01-047A24
Chromosome2 (Build37)
Map Location 119,176,546 - 119,193,978
singlet/doubletdoublet
Overlap geneChac1
Upstream geneGpr176, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik, Disp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4
Downstream geneInoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047A24.T7 (MSMg01no047_a24.b1)MSMg01-047A24.TJ (MSMg01no047_a24.g1)
ACCAG277281AG277282
length727728
length of high quality
(start - end)		603 (46 - 648)525 (77 - 601)
definitionCHROMAT_FILE: MSMg01no047_a24.b1 PHD_FILE: MSMg01no047_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:21 2005CHROMAT_FILE: MSMg01no047_a24.g1 PHD_FILE: MSMg01no047_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,193,565 - 119,193,978)(119,176,546 - 119,177,070)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTCCACAGTGTTCCATCCCGAGGGTCAGGGACAACAGGGAATGAC
CAGGAAGGGACGGCAAAACATTGCTCAAACAGGCCGGGTCACACAGCAAT
GGGCAGCCTGACTAGGTAGGTGTGCCTTCTGCCTATAACAGAGAGCTGGG
TTGTCCCGCAAATTCTGGCAAAACTAAGACATTCACTCACGTGTGGATTA
AAAGGACAGTTGGTCAGTGTCTGAGGGCACTGGCTGCTCGTCCAGAGGAC
CTGGGTTTGGTTCCCAGCATCACACAGTGGCTCACAACTGTCTGTAACTC
CAGTTCCAGGGGATCTGACTCCCTCTTCCAAAGGCACCAAGCCAGCATAT
ACTTATCATTTTTTGAATAATAAAAAGAACTTTACCAGCTACTGAAGTGT
CGCCCTGGGTTCCATGAGGAGAATGGCAGTGGGGGCTTCAACTCCTGGGC
CTCCTCAGCAATCAGTGGTTGTCAGTGCCAGCAAGTTCACCGAGCCTCGG
TCCAGAGATCAGACCTGGGAGAACAGAAGCGTTGAGAAGGAGAACGGGTG
TCTCTCTGAGTACAACCTGATTTTCAGTGTCCTTGTTCAGCACACGGGAA
GCAGGGTTGAGGTGGTGGCCATGAGATGGAGGAGGCTCTTGCCCTGGTCC
CATTTAGCCACATTTAAGCAGGACCTC

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGCCCAAAGTATTCCTACTGG
TCGTGCCCTGCACTGGCCACTGCTTTGGGCGGCAATGATTCTGCCAGGTG
CACCGGCTGGACTGCAGGGATGACACCGTTTAGACCACTGAGAGGGCCTT
CCCGGGAGACGGCGGGTGCCCGCGCCCATTCTAAGGCCCGTTCCCGGTGC
CAGCAGCCTGACGCAATCTGACTCGCCCTTGCTGCATGCCAGTTCTGGGG
AAACCTTCCCTGCCGTTGCATCACTCCTGCCAGGTCTGCCACGGGAGGAG
GAGCCGAACCAATCAGCACGCGCGTTGGCCCTGGGGCGGGCTGCTCTGGT
ACCCACTCGGAGGGCGGCGCGGTTAACCGAGAAGCAAAATCTAAAGGTGA
TTGGCCAGAAAGAGATTTGCCCCGCCCCAATCATAGGGACAGCTGGAGGC
AGTCTGAGGGCCTTCCTGGCCGGAGGGTTTAAAGAGCGCCTCTGGAGGGA
CCACTCAGCTGGAACGACCGATCGGTGCCAGGCCAGGTGTACGCGTCCGT
CGGTCCTTCCGTGCCCGTGCCGGAGACCAGTCTCGGAGGCCACCCGGGTC
CGTCCCTGCGCCCGGCACCATGAAGCAGGAGTCCGCATCCCAGAGCACTC
CGCCTCCTTCACTGTCCCCTGCACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_a24.b1 MSMg01no047_a24.b1 CHROMAT_FILE:
MSMg01no047_a24.b1 PHD_FILE: MSMg01no047_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:21 2005
         (603 letters)



>mm_chr2_119192976_119193978
          Length = 1003

 Score =  801 bits (414), Expect = 0.0
 Identities = 414/414 (100%)
 Strand = Plus / Minus

                                                                        
Query: 190  actcacgtgtggattaaaaggacagttggtcagtgtctgagggcactggctgctcgtcca 249
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 actcacgtgtggattaaaaggacagttggtcagtgtctgagggcactggctgctcgtcca 944

                                                                        
Query: 250  gaggacctgggtttggttcccagcatcacacagtggctcacaactgtctgtaactccagt 309
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 943  gaggacctgggtttggttcccagcatcacacagtggctcacaactgtctgtaactccagt 884

                                                                        
Query: 310  tccaggggatctgactccctcttccaaaggcaccaagccagcatatacttatcatttttt 369
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883  tccaggggatctgactccctcttccaaaggcaccaagccagcatatacttatcatttttt 824

                                                                        
Query: 370  gaataataaaaagaactttaccagctactgaagtgtcgccctgggttccatgaggagaat 429
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823  gaataataaaaagaactttaccagctactgaagtgtcgccctgggttccatgaggagaat 764

                                                                        
Query: 430  ggcagtgggggcttcaactcctgggcctcctcagcaatcagtggttgtcagtgccagcaa 489
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763  ggcagtgggggcttcaactcctgggcctcctcagcaatcagtggttgtcagtgccagcaa 704

                                                                        
Query: 490  gttcaccgagcctcggtccagagatcagacctgggagaacagaagcgttgagaaggagaa 549
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  gttcaccgagcctcggtccagagatcagacctgggagaacagaagcgttgagaaggagaa 644

                                                                  
Query: 550  cgggtgtctctctgagtacaacctgattttcagtgtccttgttcagcacacggg 603
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  cgggtgtctctctgagtacaacctgattttcagtgtccttgttcagcacacggg 590


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no047_a24.g1 MSMg01no047_a24.g1 CHROMAT_FILE:
MSMg01no047_a24.g1 PHD_FILE: MSMg01no047_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:21 2005
         (525 letters)



>mm_chr2_119176346_119177270
          Length = 925

 Score = 1015 bits (525), Expect = 0.0
 Identities = 525/525 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgccgcccaaagtattcctactggtcgtgccctgcactggccactgctttgggcggcaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgccgcccaaagtattcctactggtcgtgccctgcactggccactgctttgggcggcaat 260

                                                                       
Query: 61  gattctgccaggtgcaccggctggactgcagggatgacaccgtttagaccactgagaggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gattctgccaggtgcaccggctggactgcagggatgacaccgtttagaccactgagaggg 320

                                                                       
Query: 121 ccttcccgggagacggcgggtgcccgcgcccattctaaggcccgttcccggtgccagcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttcccgggagacggcgggtgcccgcgcccattctaaggcccgttcccggtgccagcag 380

                                                                       
Query: 181 cctgacgcaatctgactcgcccttgctgcatgccagttctggggaaaccttccctgccgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgacgcaatctgactcgcccttgctgcatgccagttctggggaaaccttccctgccgt 440

                                                                       
Query: 241 tgcatcactcctgccaggtctgccacgggaggaggagccgaaccaatcagcacgcgcgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatcactcctgccaggtctgccacgggaggaggagccgaaccaatcagcacgcgcgtt 500

                                                                       
Query: 301 ggccctggggcgggctgctctggtacccactcggagggcggcgcggttaaccgagaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccctggggcgggctgctctggtacccactcggagggcggcgcggttaaccgagaagca 560

                                                                       
Query: 361 aaatctaaaggtgattggccagaaagagatttgccccgccccaatcatagggacagctgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatctaaaggtgattggccagaaagagatttgccccgccccaatcatagggacagctgg 620

                                                                       
Query: 421 aggcagtctgagggccttcctggccggagggtttaaagagcgcctctggagggaccactc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcagtctgagggccttcctggccggagggtttaaagagcgcctctggagggaccactc 680

                                                        
Query: 481 agctggaacgaccgatcggtgccaggccaggtgtacgcgtccgtc 525
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctggaacgaccgatcggtgccaggccaggtgtacgcgtccgtc 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space:   471225
Effective search space used:   471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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