BAC Information

Click to search

BAC

Clone NameMSMg01-047B13
Chromosome2 (Build37)
Map Location 168,716,610 - 168,848,917
singlet/doubletdoublet
Overlap geneZfp64, LOC100043909
Upstream geneLOC100043728, Ptpn1, 2310033K02Rik, Pard6b, Adnp, Dpm1, Mocs3, LOC100043908, Kcng1, LOC668952, Nfatc2, Atp9a, Sall4
Downstream geneEG668954, Tshz2, LOC100043737
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047B13.T7 (MSMg01no047_b13.b1)MSMg01-047B13.TJ (MSMg01no047_b13.g1)
ACCAG277307AG277308
length693724
length of high quality
(start - end)
372 (46 - 417)241 (78 - 318)
definitionCHROMAT_FILE: MSMg01no047_b13.b1 PHD_FILE: MSMg01no047_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:23 2005CHROMAT_FILE: MSMg01no047_b13.g1 PHD_FILE: MSMg01no047_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,716,610 - 168,716,977)(168,848,679 - 168,848,917)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATCCACCTTCCACCTAATGCTACGATTGTGGGTAGCCTGGGCTAG
CCTTAGTCTATGCAATGATGACCTTGGATGGATGGCAGGGAGTTAGTTAC
CCGTTTCCATGACGACTAGATTGTCCCTGGTCTTGCCGCCTTTGGTTGCT
TTTGTGTAAACATGGCAGAGCTGGGGCTGGAGAGACAGGCCAGCGGTTCA
AAACATGTGGTGCTCTTGTAGAGGGCATTGGTTTGCTTCCCAGCACCCAC
ATTGCAGCTCACAACCATCTGTAGCTCTAGGTTTAGGGGGTCTGATGCCT
TTGGACCTCCGTAGGTACCTGGCACACATGTGATGCAGACATACATGCAA
GCAAAACACTGTACATCTACAAATAAAATTTAAAAATCTGAAAAAATGAT
TGCAGGCCCTCAGTGCCTAATGCACTCAATACCTGACCCGAACTCTCTGC
TCCCTCTGAGTACCGTGAATCCCAATTTGCTAAGGGAGCCAGATGTTGTG
GCACACTCTTTTGATCCCAGCATTTAGGGGGTAGGGGGCGATTTATGTTT
TACTCTCCCCCTTCTTCCTCTTTTTCCCCCCCTTTTTCTTCCCCCTTCCT
TCGTTCTCTCCCTCTTACTTTCTTTTCCTCCTTTTTTCTTCCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCTGGGGATTGGTGGGATGT
CAAGTTCTGAACTTGGGGAAAGCCTAGGGGTTGGTGGGATTTCAAGCTCA
GGAATTGATGTGTTTTCAAGCTGAAGGATTGGTGAGCTTTCATGGGTTTT
TCAAACCCAGAAGTGAGCTCTGACCTTTTACCCTACATTTCCTAGAATCC
TTCTTGGAAGACTAGAAATCACACAAATTTAATGATCCTCAGTTACCAAG
TTAACCCACTACCCAGCTTGGATTTACCACTGTATCAGTTTCCTCTAAAT
TGACACATTTGTTTTTTTATACACAAAACACCCTCTTATAACTCCTATAG
TAACCAGTTTGTACGTCTTAGCCACAATCTGAAATTCTTATGACTGCCGT
GGGTTCTTCTTAGCGTGACTGATTTTGCTTTGCATCACCTTGGTTTACTT
TCTCTCTCTTGCCCGCTCTATATCCATTCTTTCCACTCTCCTCCTCCTCC
TCTCCCTTTTCCCTTCTCTTCATACCACACTGGCGTTCTGTTGTTTTTTA
CCTCTCTCTCACCCTTCCCCTCCTATTTTCCCCCGCCTTCCTCTCGCATA
CCACCACCCCCACAACATANAGTTGTTTTTGTGTTAAACATCTCTTATTT
TCCTCCTCTCCTTCATTTCTTTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_b13.b1 MSMg01no047_b13.b1 CHROMAT_FILE:
MSMg01no047_b13.b1 PHD_FILE: MSMg01no047_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:23 2005
         (372 letters)



>mm_chr2_168716406_168717177
          Length = 772

 Score =  688 bits (356), Expect = 0.0
 Identities = 365/368 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatccaccttccacctaatgctacgattgtgggtagcctgggctagccttagtct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatccaccttccacctaatgctacgattgtgggtagcctgggctagccttagtct 264

                                                                       
Query: 65  atgcaatgatgaccttggatggatggcagggagttagttacccgtttccatgacgactag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgcaatgatgaccttggatggatggcagggagttagttacccgtttccatgacgactag 324

                                                                       
Query: 125 attgtccctggtcttgccgcctttggttgcttttgtgtaaacatggcagagctggggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attgtccctggtcttgccgcctttggttgcttttgtgtaaacatggcagagctggggctg 384

                                                                       
Query: 185 gagagacaggccagcggttcaaaacatgtggtgctcttgtagagggcattggtttgcttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagagacaggccagcggttcaaaacatgtggtgctcttgtagagggcattggtttgcttc 444

                                                                       
Query: 245 ccagcacccacattgcagctcacaaccatctgtagctctaggtttagggggtctgatgcc 304
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagcacccacatggcagctcacaaccatctgtagctctaggtttagggggtctgatgcc 504

                                                                       
Query: 305 tttggacctccgtaggtacctggcacacatgtgatgcagacatacatgcaagcaaaacac 364
           |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttggacctccgtaggcacctggtacacatgtgatgcagacatacatgcaagcaaaacac 564

                   
Query: 365 tgtacatc 372
           ||||||||
Sbjct: 565 tgtacatc 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space:   276969
Effective search space used:   276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no047_b13.g1 MSMg01no047_b13.g1 CHROMAT_FILE:
MSMg01no047_b13.g1 PHD_FILE: MSMg01no047_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:23 2005
         (241 letters)



>mm_chr2_168848353_168848993
          Length = 641

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggctggggattggtgggatgtcaagttctgaacttggggaaagcctaggggttggtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caggctggggattggtgggatgtcaagttctgaacttggggaaagcctaggggttggtgg 506

                                                                       
Query: 61  gatttcaagctcaggaattgatgtgttttcaagctgaaggattggtgagctttcatgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gatttcaagctcaggaattgatgtgttttcaagctgaaggattggtgagctttcatgggt 446

                                                                       
Query: 121 ttttcaaacccagaagtgagctctgaccttttaccctacatttcctagaatccttcttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttcaaacccagaagtgagctctgaccttttaccctacatttcctagaatccttcttgg 386

                                                                      
Query: 181 aagactagaaatcacacaaatttaatgatcctcagttaccaagttaacccactacccag 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aagactagaaatcacacaaatttaatgatcctcagttaccaagttaacccactacccag 327


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)