Query= MSMg01no047_n04.b1 MSMg01no047_n04.b1 CHROMAT_FILE:
MSMg01no047_n04.b1 PHD_FILE: MSMg01no047_n04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:14 2005
(670 letters)
>mm_chr2_65719857_65720930
Length = 1074
Score = 1176 bits (608), Expect = 0.0
Identities = 653/670 (97%), Gaps = 4/670 (0%)
Strand = Plus / Plus
Query: 5 gaattctaggccatcctgagtgggctactgtacagagggagcttgtgtcagaataacgga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaggccatcctgagtgggctactgtacagagggagcttgtgtcagaataacgga 264
Query: 65 aacaacaacagtgctaacaataagcaaagagccaaacctcttag----acaattcccata 120
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 265 aacaacaacagtgctaacaataaggaaagagccaaacctcttagtacaacaattcccata 324
Query: 121 gtcttcctaaatattcgtatactggcggtcctagcatagcaaccgaggaaacagagcccc 180
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 325 gtcttcctaaatattcgtatactggtggtcctagaatagcaaccgaggaaacagagcccc 384
Query: 181 cagcatgccagtaggaaaaggatggcagcagagtgaggtgatgtttgtttggttgctgtc 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 cagcatgccagtaggaaaaggatggcagcagagtgaggtgatgtttgtttagttgctgtc 444
Query: 241 tgaattaaactgtagcagatagtgtttattccatgatgtagggagaactaacggctggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgaattaaactgtagcagatagtgtttattccatgatgtagggagaactaacggctggct 504
Query: 301 ctagctgaccaccaaggccacgtctatctgtgttgagaaagccaaaagtaaaagtaaaag 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctagctgaccaccaagaccacgtctatctgtgttgagaaagccaaaagtaaaagtaaaag 564
Query: 361 aaaggagatactgtgcaagacagagaactgttagaaccttagaaagaaaccaaaagtttc 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 565 aaaggagatactgtgcaagacagagaactgttagaaccttagaaagaaaccaaaggtttc 624
Query: 421 ttgtgcgatatcagacaccatagatttatttcaaaccaaaggggacctttttcccacatt 480
|||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 625 ttgtgccatatcagagaccatagatttatttcaaaccagaggggaccttttccccacatt 684
Query: 481 catttattcaagcatacctaggacatgtctttgccaaagcaaatgggttcacttcaattc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 catttattcaagcatacctaggacatgtctttgccaaagcaaatgggttcacttcaattc 744
Query: 541 atttgatttcatcttccccaaagtacgcttgacaaatatgctacccaaggaactcttttt 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 745 atttgatttcatcttccccaaagtacgcttgacaaatatgctatccaaggaactcttttt 804
Query: 601 ttcaaacatgtaggatgtatctaactccctggagactcctgcttcctctcacaaaccagt 660
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 805 ttcaaacatgtaggatgtatctaactccctggagactcgtgcttcctctcacaaaccagc 864
Query: 661 cctgcatgca 670
||||||||||
Sbjct: 865 cctgcatgca 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1074
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1064
Effective search space: 702240
Effective search space used: 702240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_n04.g1 MSMg01no047_n04.g1 CHROMAT_FILE:
MSMg01no047_n04.g1 PHD_FILE: MSMg01no047_n04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:14 2005
(291 letters)
>mm_chr2_65768731_65769421
Length = 691
Score = 530 bits (274), Expect = e-155
Identities = 283/286 (98%)
Strand = Plus / Minus
Query: 1 tgatcatcatagggttgacccagtcattttcttaaaattaagctaatttatttttcttca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 410 tgatcatcatagggttgacccagtcattttcttaaaattaagctaatttctttttcttca 351
Query: 61 tatgttaataactaacatctataatataaaaggttttataaatgttttccatttctggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatgttaataactaacatctataatataaaaggttttataaatgttttccatttctggga 291
Query: 121 agaatcataatatggaaaatagaaggcaaataattactagcatcttaataaagtacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agaatcataatatggaaaatagaaggcaaataattactagcatcttaataaagtacaaaa 231
Query: 181 tacctttaagtaacattattgacatttttcatttaaattttttaattgaaaaatattaga 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 230 tacctttaagtaacattattgacatttttcatttaaatttttttattgaaaaatattaga 171
Query: 241 cattttacataaatacccttacaggatagtgaaaaatatcggtaaa 286
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 170 cattttacctaaatacccttacaggatagtgaaaaatatcggtaaa 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space: 192324
Effective search space used: 192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
