Query= MSMg01no048_g14.b1 MSMg01no048_g14.b1 CHROMAT_FILE:
MSMg01no048_g14.b1 PHD_FILE: MSMg01no048_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:20 2005
(810 letters)
>mm_chr2_66594526_66595735
Length = 1210
Score = 1402 bits (725), Expect = 0.0
Identities = 773/789 (97%)
Strand = Plus / Minus
Query: 21 aagaacatatgacaacccattgatagaatgactttacacatggccaaattttacatatct 80
|||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |
Sbjct: 975 aagaacatatgacaacttattgatagaatgactttacacatggccatattttacacattt 916
Query: 81 actattttacaggcccaaaaccgaaaatgttgacttccccagagccgaagggccttgtcc 140
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 actattttacaggtataaaaccgaaaatgttgacttccccagagccgaagggccttgtcc 856
Query: 141 catttacaacagagtcacttgaacttatagaaaatcacattgctaaaaagtgcaatgaag 200
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 855 catttacaacagagtcacttgaacttatagaaaatcacattgctaaaaaatgcaatgaag 796
Query: 201 agcctgaagaagaagaaggtttaaaaccaagttgtaatctagaagctggcaaaagacttc 260
| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 795 accccgaagaagaagaaggtttaaaaccaagtcgtaatctagaagctggcaaaagacttc 736
Query: 261 caattccctatggaaccctccctcgaggaaccgtgtcagagcccttggaagatgtggatc 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 caattccctatggaaccctccctcgaggaaccgtgtcagagcccttggaagatgtggatc 676
Query: 321 catactactatgttaagagaaatgtaagtattaactgttatcattgaagctatattttac 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 catactactatgttaagagaaatgtaagtattaactgttatcattgaagctatattttac 616
Query: 381 ttcgcttatattcagccacttgaaatgtaattgagataagacttaaagaaaattaataga 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttcgcttatattcagccacttgaaatgtaattgagataagacttaaagaaaattaataga 556
Query: 441 gaaggcattctttcataatctattctttgtgggggtcaacatgctcaagatagttaaacc 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gaaggcattctttcataatctattctttgtgggggtcaacatgctcaagatagttaaacc 496
Query: 501 tgataaaatatctgagtaatatattatggttaatgaccgtagtatatatactgctattcc 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgataaaatatctgagtaatatattatggttaatgaccgtagtatatatactgctattcc 436
Query: 561 ttaatataagtggctattgtgaaaatatgctaattaccattttctgattagcaattttaa 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ttaatataagtggctattgtgaaaatatgctaattaccattttctgattagcaattttaa 376
Query: 621 aacaatcatgaaatatttagaatatggacagaaatttcaaataccttgataacttactag 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aacaatcatgaaatatttagaatatggacagaaatttcaaataccttgataacttactag 316
Query: 681 tcaaaatagtacatttattcctaatcatatataaatccacaaattcaaacctccctcatt 740
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcaaaacagtacatttatttttaatcatatataaatccacaaattcaaacctccctcatt 256
Query: 741 tccaggaagactttagagacctagaaattatgtatacacaaacacacacacacacacaca 800
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 255 tccaggaagactttagagacctagaaattatgtatacacaaacacacacacacacataca 196
Query: 801 cacacacac 809
|||||||||
Sbjct: 195 cacacacac 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 810
Length of database: 1210
Length adjustment: 10
Effective length of query: 800
Effective length of database: 1200
Effective search space: 960000
Effective search space used: 960000
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no048_g14.g1 MSMg01no048_g14.g1 CHROMAT_FILE:
MSMg01no048_g14.g1 PHD_FILE: MSMg01no048_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:20 2005
(747 letters)
>mm_chr2_66436621_66437767
Length = 1147
Score = 1326 bits (686), Expect = 0.0
Identities = 728/744 (97%), Gaps = 5/744 (0%)
Strand = Plus / Plus
Query: 3 tctttcctgaagcctttccttcagttagcacattctgacaacaacagctgcgctccccaa 62
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 203 tctttcctgaagcctttccttcagttagcacattctgacaataacagctgcgctctttaa 262
Query: 63 gaacggttggctgtctccccagtatttgtgtgctttgcattttttaattaaaattaactt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaacggttggctgtctccccagtatttgtgtgctttgcattttttaattaaaattaactt 322
Query: 123 tactgttataaatagtagaaaagaaagaactcagtcatgtttttgttcattctgtaatat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tactgttataaatagtagaaaagaaagaactcagtcatgtttttgttcattctgtaatat 382
Query: 183 cacatctgtaagaatggagaacaaatggaaatgaagacaaactgtttttaaataatatga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cacatctgtaagaatggagaacaaatggaaatgaagacaaactgtttttaaataatatga 442
Query: 243 agggaacagaacagacttgcggcattttttcaacgtcaaacgatttattttaagaaaata 302
||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||
Sbjct: 443 agggaacagaacagacttgtgggatttttttaacgtcaaacgatttattttaagaaaata 502
Query: 303 caatttatagttgactatacacaagttttcaccctgatacttgtatttaaacatcagctt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caatttatagttgactatacacaagttttcaccctgatacttgtatttaaacatcagctt 562
Query: 363 cctaacacaaatggaagtgcatttacagaacagtgtttttactggaccttctgtgtcagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cctaacacaaatggaagtgcatttacagaacagtgtttttactggaccttctgtgtcagt 622
Query: 423 cttttattattattactatttcttatcttatttttattggttattgtatttatttatttt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttttattattattactatttcttatcttatttttattggttattgtatttatttatttt 682
Query: 483 tcaaatgttgttgcccctcttcccttcctggtcccctct--ctgcaaactatccatccca 540
||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct: 683 tcaaatgttgttgcccctcttcccttcctggtc---tcttcctgcaaagtatccatccca 739
Query: 541 cctcccctcccctttacctctaagagggtgctcccccacctacctacctactcccacctc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 cctcccctcccctttacctctaagagggtgctcccccacctacctacctactcccacctc 799
Query: 601 acctctctagcatccccctacactggggtatcaagcctccacagcaccaagctcctcctc 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 800 acctctctagcatccccctacactggggtatcaagcctccacagtaccaagctcctcctc 859
Query: 661 tcccattgatgccaaataaggccatcctctgctacataggtagctggagccattggtctc 720
|||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 860 tcccattgatgccaaataaggctatcctctgctacataggtagctggagccatgggtctc 919
Query: 721 tccatgtatactctttggttggtg 744
||||||||||||||||||||||||
Sbjct: 920 tccatgtatactctttggttggtg 943
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1147
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1137
Effective search space: 837969
Effective search space used: 837969
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
