BAC Information

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BAC

Clone NameMSMg01-049F14
Chromosome2 (Build37)
Map Location 67,329,210 - 67,329,487
singlet/doubletsinglet
Overlap geneCmya3
Upstream geneScn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneLOC621171, LOC227995, B3galt1, Stk39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049F14.T7 (MSMg01no049_f14.b1)MSMg01-049F14.TJ (MSMg01no049_f14.g1)
ACCAG278838AG278839
length1,3451,314
length of high quality
(start - end)
279 (72 - 350)403 (77 - 479)
definitionCHROMAT_FILE: MSMg01no049_f14.b1 PHD_FILE: MSMg01no049_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:16 2005CHROMAT_FILE: MSMg01no049_f14.g1 PHD_FILE: MSMg01no049_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAAA
TCTAAGTTTTACCCTATACATTGAATACTGATTTAATAAACTAGTGAATT
TACCTTATTATGAATCATTTCTACATTTCACCAGAGCTTCTTTAAAGTCT
CCTTTTCTTCACCTTTTCGTAGCCTTAAGTTGTGTTTTTTACTATAGCAG
GCATCTTGAAAGGGCCAAAAGCGCAAGGAGGCTCTACTATCAGGAGAGCA
GAGTGATAAACAGGAAGTAAGCCTCCTCCGGTGACAAAGGAAGAGAAAGA
TGAAGAGGAAGAAGAGGGGGGGAGGGAGGGACAGAGGGAGGAGAGGTATT
TTTTCTTCTCTATTCTTCATATTCATACATATATATAATACTTCTTTTTT
CTTTTTCTCTCACAAATATTAATTTCTTTTTTACATAATAAATATTTATC
ACTTCTTTCTTACTTTTATCATTTTTTAACTTCTATTATTTTATGTATTT
TCCTGCTTCTTTTTTCTTATACCTCTCCCTTTATTACATATTTTAATACT
TCAATTAACTTTTCTTCATACTTTTTTCATTCATAATCTTAATTCTCTAT
ATATCCTTATATTATTTTAAATATTTTCTTATCTATACTATTAATTTAAT
CTAACTTATTTCTTTTTCTTTTAGCTTAATATAAAATATAATTCTCTTTT
ATATCTTTCTACTATTCCCTTTCTTATGTACTTATCTATTTCTATTCTAT
ATTTATAATAAATTTAATATTCTTATTTATACTCTTATATTATATAATAA
ACTATTCTTATATATAATTCCTAATATCTATAATATATCTTCTATTCTAT
TTTTACTTTTACAAATTCTCTTCATTTTCCGACATAATTTTTTATTCTCT
TCTTAAATTGAATATTTTAATTATTATATTAAATTGTTATCTTTTTATTT
TCATATCTCTTATTTTACTTTCTTTTATTATTTCACCCCTTTTTTTTATT
CTATTGTTCATTATTATTTAATCATATTGTATATCTCTCTAACTTTATAT
TTATTATTTTTTTAAGTCAATTTTCTATACTAAATATAATCGACTCTTCT
CATTCTCTATTTTGATATACATTTTTCTTATACTATCATACTTATTATTA
TACTTCTGTACTTTACATATATCTTTTAACTTGCAATTAATCATACCATT
TTTCATTACTTGTATCTTCTTTATGCTACTTTCTCCTTTAATTATACTTT
TTACTTATATTTACTTATCTATACTTATTCATATTTTATATATATACTCT
CATATAAATCCTTTATTGTTATTCTATTTAATATTCATTCCTATG
NNTTAAGTATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTCTTTAACCTATTTGGTTGTGTTCTCCTGCAAT
TCTTTACCGTATTTTTGTGCTTCCTCTTTAATATCTTCTACCTGTTTAGC
AGTGTTCTCCTGTATTTCTTTAATTGAGTTATTAAAGTTCTTCTTGATGT
CCTCTACCATCATCATAAAATATGCTTTTAAATCCGGGTCTAGGTTTTCA
GGTGTGTTGGGGTGCCCTGGACTGGGTGAAGTGGGAGTGCTGGGTTCTGA
TGATGGTGATTGGTCTTGGTTTATGTTAGTAATTCTTTTGTTTACCTTTC
GCCATCTGGTAATCTCTGGAGTTAGTTGTTATAGTTGTTCCTGTTTAGAT
ATTGTTCCTCTGGTGATTCTGTTACCCTCTATCAGCAGTCCTGGGAGACT
TGCTCTCTCCTCTGAGTTTCAGTGGTCAGAGCACTCTCTGCAGGCCAGCT
CTCCTCTTACAGGGAAGGTGTACAGATATCTGGCGTTTGGACCCCCCCTC
TGCTCGAACATGAAGGCCCAAAACAGGACCTTTCCCAAAAACTGCGTTGC
TTTGGCCTGTCCCATAAGCTGTTATCTTCTGTGTGCACACTCTCATCTGT
GTATACTACTTTTCGGTGTCTTCCTGTAACCAAGACGCCTCCCGCATATT
CTGATGCTTTAGCCTCTGGTTTTGAGCTGACCCATGTCCTCTGGCCTTTT
AAGTGTACATATTTCTTTAACCTCTAAAATGATGTTCTCTTCTAAAATTT
TTTTTCCTCCTGCCCTATTCAAATAATTCTTATTTTTTTGTTGTTTAACT
TTTTAATCAATTATTTTTTTCCAATTTATACCTTTTTATGATATACTTTT
AATTTTTATATTTTTATTCTATACTTATTATTGTATATTTCTAATATTCC
TATTTGAAATCCTTTTTAATTTGTATTTTTAAATTATCTTATATTATTAA
AAACATACTTTATTATTTTATTAGTATTTCTATGACTTTTTATTTGCCAT
ATACTTTTCTATCTATTAATTTCATACATTCCCCAAACTTCTTACTATTT
CTTATACGATTTTTATGTTCTATTTCTTATTTTATTTTGCTTATATAGTA
TAATATATTTATCTCCCCCCTTTAATTTTTATAATAATTATTATTAAGTA
TATAATTATATTATCTTAAATCTAGTATTCTATTAGCTTTCTNTTNACAC
ATCTGACTTCCAAATTATGTATAATTGTATTATATGTACTATATATAANT
ATCTCTATTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_f14.b1 MSMg01no049_f14.b1 CHROMAT_FILE:
MSMg01no049_f14.b1 PHD_FILE: MSMg01no049_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:16 2005
         (279 letters)



>mm_chr2_67329074_67329752
          Length = 679

 Score =  472 bits (244), Expect = e-137
 Identities = 269/278 (96%), Gaps = 3/278 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatactgatttaataaactagtgaatttaccttattatgaatcatttctacatttcac 60
           |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct: 414 tgaatactgatttaataaactaatgaatttacattattatgaatcatttctacatttcac 355

                                                                       
Query: 61  cagagcttctttaaagtctccttttcttcaccttttcgtagccttaagttgtgtttttta 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 354 cagagcttctttaaagtctccttttcttcaccttttcgtagcctcaagttgtgtttttta 295

                                                                       
Query: 121 ctatagcaggcatcttgaaagggccaaaagcgcaaggaggctctactatcaggagagcag 180
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 294 ctatagcaggcatcttgaaagggccaaaggcgcaaggaggctctaccatcaggagagcag 235

                                                                       
Query: 181 agtgataaacaggaagtaagcctcctccggtgacaaaggaagagaaagatgaagaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 agtgataaacaggaagtaagcctcctccggtgacaaaggaagagaaagatgaagaggaag 175

                                                 
Query: 241 aagaggggg--gga-gggagggacagagggaggagagg 275
           ||| |||||  ||| |||||||||||||||||||||||
Sbjct: 174 aagggggggagggaagggagggacagagggaggagagg 137


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)