Query= MSMg01no049_h01.b1 MSMg01no049_h01.b1 CHROMAT_FILE:
MSMg01no049_h01.b1 PHD_FILE: MSMg01no049_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:27 2005
(792 letters)
>mm_chr2_83111028_83112219
Length = 1192
Score = 1452 bits (751), Expect = 0.0
Identities = 779/789 (98%), Gaps = 4/789 (0%)
Strand = Plus / Plus
Query: 5 gaattctttgtttagctctgaaccctttttttaatggtgttatttgaatctctggagtcc 64
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttagctctgaaccccatttttaatggtgttatttgaatctctggagtcc 264
Query: 65 agcttcttgagctctttgtatatattggatattagtcccctatcagatttaggattggta 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agcttcttgagctctttgtatatattggatattagtcccctatcagatttaggattggta 324
Query: 125 aaaatcctttcccaatctgccattttatgtctgtctatgtctgtctgtctctatctcagt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatcctttcccaatctgccattttatgtctgtctatgtctgtctgtctctatctcagt 384
Query: 185 ctctgtctctctgtttcactgtatctgtctttctgtctctgtatctctctgtatctcttt 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 385 ctcggtctctctgtttcactgtatctgtctttctgtctctgtatctctctgta--tcttt 442
Query: 245 gcatgtctctgtatctccctcccttcccctctcccttcttctctct-t-tctctctctat 302
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 443 gcatgtctctgtatctccctcccttcccctctcccttcttctctctctctctctctctat 502
Query: 303 ctccctctctctctctctgcccttgccccatgtttgcatgctatttttgagtagggatgt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctccctctctctctctctgcccttgccccatgtttgcatgctatttttgagtagggatgt 562
Query: 363 aagctctcatctactgctccagccactatgcctgtttgcctgctgccatgcttcctatca 422
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aagctctcagctactgctccagccactatgcctgtttgcctgctgccatgcttcctatca 622
Query: 423 tgataataatgggctcaccctctgaactataagcagtcctccaataaactctttcttctg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgataataatgggctcaccctctgaactataagcagtcctccaataaactctttcttctg 682
Query: 483 taagttgccttggtcatggtttttatcattgcaatagtagccctaactaaaaaatgttat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taagttgccttggtcatggtttttatcattgcaatagtagccctaactaaaaaatgttat 742
Query: 543 taaaaatcatgaatacataattaatataaatttatattttatatttctttcaaagaaaga 602
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 743 taaaaattatgaatacataattaatataaatttttattttatatttctttcaaagaaaga 802
Query: 603 attcaaaacaaatgcaggcaaaagtgtgatagaatttcaacatgtttatcatcacttcta 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 attcaaaacaaatgcaggcaaaagtgtgatagaatttcaacatgtttatcatcacttcta 862
Query: 663 ggagagacagcctcgaggcagaagcttcaatatgaatttaagccttgtaaaataaacaag 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ggagagacagcctcgaggcagaagcttcaatatgaatttaagccttgtaaaataaacaag 922
Query: 723 aaaacaaccttgaagttgtatatgtgagaagcagtcaaattctctaaacttctccaaaat 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 aaaacaaccttgaagttgtatatgtgagaagcagtcaaattctctaaacttctccaaaat 982
Query: 783 aaccattta 791
|||||||||
Sbjct: 983 aaccattta 991
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 792
Length of database: 1192
Length adjustment: 10
Effective length of query: 782
Effective length of database: 1182
Effective search space: 924324
Effective search space used: 924324
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_h01.g1 MSMg01no049_h01.g1 CHROMAT_FILE:
MSMg01no049_h01.g1 PHD_FILE: MSMg01no049_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:27 2005
(713 letters)
>mm_chr2_83128941_83130053
Length = 1113
Score = 1069 bits (553), Expect = 0.0
Identities = 571/577 (98%), Gaps = 1/577 (0%)
Strand = Plus / Minus
Query: 9 tcagaactgctagaaacaaagggatgagcaaaactgtcccgagcttcctgtgtatctgac 68
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 576 tcagaactgctagaaacaaagggatgagcaaaactgtcctgagcttcctgtgtatctgac 517
Query: 69 aagataagagaactgggaaaagagaatggtcagtggaatgaatcacttcagagttctaaa 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagataagagaactgggaaaagagaatggtcagtggaatgaatcacttcagagttctaaa 457
Query: 129 ttttagattaagtgattggttcttcttgctttttacagtgtaactttaaagaaaaaaaac 188
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 456 ttttagattaagtgattggttcttcttgctttttacagtataactttaaagaaaaaaaac 397
Query: 189 aagttttactctttttctaaattttagcttctatgtccattatgtctgcatgtatttcta 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aagttttactctttttctaaattttagcttctatgtccattatgtctgcatgtatttcta 337
Query: 249 tcttaaacactggtcctttattttgcaaaagacaatggtggcatcacagttaacaaaaga 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tcttaaacactggtcctttattttgcaaaagacaatggtggcatcacagttaacaaaaga 277
Query: 309 gctaggatggctgactagaaaaagatggtagttacaaacaagaaagactttaagaagagc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gctaggatggctgactagaaaaagatggtagttacaaacaagaaagactttaagaagagc 217
Query: 369 cacatgaatcgctccttccctcctcctccctcctctctctcttcctctctttctctttcc 428
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 216 cgcatgaatcgctccttccctccccctccctcctctctctcttcctctctttctctttcc 157
Query: 429 tattttgttgatttcagttctaagtttgattatttcttgttgtatactccttttaattgt 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 tattttgttgatttcagttctaagtttgattatttcttgttgtatactccttttaattgt 97
Query: 489 gatttctttctattttagagctgtcagtagtgctgttaagttcctatttttgagatctct 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 gatttctttctattttagagctgtcagtagtgctgttaagttcctatttttgagatctct 37
Query: 549 ctctctctctcctctctctctctcatttattttttac 585
|||||| |||| |||||||||||||||||||||||||
Sbjct: 36 ctctctttctc-tctctctctctcatttattttttac 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
