BAC Information

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BAC

Clone NameMSMg01-049I10
Chromosome2 (Build37)
Map Location 107,389,233 - 107,389,754
singlet/doubletsinglet
Overlap genenone
Upstream geneC130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb, Kcna4
Downstream geneLOC100043078
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049I10.T7 (MSMg01no049_i10.b1)MSMg01-049I10.TJ (MSMg01no049_i10.g1)
ACCAG278946AG278947
length1,2861,246
length of high quality
(start - end)
324 (78 - 401)522 (86 - 607)
definitionCHROMAT_FILE: MSMg01no049_i10.b1 PHD_FILE: MSMg01no049_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:38 2005CHROMAT_FILE: MSMg01no049_i10.g1 PHD_FILE: MSMg01no049_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGCCACCTTTGGGCGCTAAXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTAGGCTTCTTGGATGCTCTTGGGCATCTCTTTCTTTAGATTTGGGA
AGTTTTCTTCACTAATTTTGTTGAAGATGTTTGCTGGTCCTTTGAGTTGA
AAATCTTCATTCTCATCCACTTCTATTATGCGTAGGTTTGGTCTTCTCAT
TGTGTCCTGGATTTCCTGGATGTTTTGAGTTAGGATCTTTTTGCATTTTC
CATTTTCCTTGATTGTTGTCCCGAAGTTCTCTATGGAATCTTCTGCACCT
GAGATTCTCTCTTCCATCTCTTGTATTCTGCTGCTGATGCTGGCATCTAT
GGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCGTTGCCTCACTTT
GTGTTTTCTTCATTGTGTCTACTTCCCTTTCTAGGTCTAGTATGGTTTTG
TTCATTTCTATCACCTGTTTAGATGTGTTTTCCTGTTTTTCTATAAGGAC
TTCTACCTCGTTTGGTTGTGTTTTCCTGTCTTTCTTTAAGGACTTGTAAC
TCTTTACCAGTGTTCTCCTGTATTTCTTTATGTGATTTATTAAATTCCTT
CTTTATGTCCTCTACCATCATCACGAGAAATGCCTTTATATCCAGGTCTA
CCTTTTCAGGTGTGTTAAGATGCCCTTGACTGGTCTAAGTGTAAGTGCTC
TTTTCTGATCCTGTTGACTGCTCTCTCTTCCTGTTAATAACTATCTTACA
TTTATCTTTCTCTATATTGTACTTCCTCCGTATTTACATGTTTATACTTG
TCTTTCTATTAAATTCTTATATCTTTGTAGCTTCTTTTTATTTATCTTTT
TCTATATATTTTAATACTATTTACTTTCCTATATATTATTTTCTTACATC
TTTTACCATATTTATATTCTAATTACACTTTCTCTATCATTTTTATATAT
ATTTTTATAATTATTACTTCACTATTTTATATATATCTTCTATATAAGAT
ATATATAATCTACTTCTTTCTTCATATTATCTTTCTATCTACTTTTAACT
TTATTTTTTTCTTTAATTCATATCTTTCTACTATCATTTACTCAATTTCA
TCAAATATTCTTGATTCTATTATTTGTTTTTCTCCTATTTTTCTCTCACT
TACATATCTTATTTCCTTAGTGTACTCTATTATTTTTAGCTCTTCTTATA
TTTTNACTTTATTATATATTTTACTTATAAATAAACTTAACTCTCCTACC
TATTGTACAGTACCTCTTTTNATCATATATTTTATG
TTTTTTGAAACATGTGAGCCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCCTTTAAGCTTTGTTCTTTAAATGAATTGT
GAGTGACAAACCTTTGATACCCCTTTCAGCAAGAGAAAACCATAAAGATG
ATAGTAAGGGAGGGATGACATTTCTGGAGACCAGAATTCGTCCTAGCTAG
AGAACCAAAATAGGTCACACTTCTTCTTCTAATAGAATTTGAATACACAG
GGTCATATTTAATAAGGATGCAGTTCTATGTCATCTTAATTTTTGAAGAT
TGATGTCATCAACTACCAAACACTGATTGGCTTACTCCAGTGCAATTTTT
CTCTCCCAGACTGGAGGGTTGAAATCCATGACTGAAGTTCTTGTAGAGTC
TTACTCTCTAGAAAGAACATCAGGCTTCTCCCTAGCTTTCAGTGGCTGTC
GATAATCCATTTCCTAGTTCATCAACATGTGGACTCCATCATTTCGTCTG
AACATCTCTGCTTTTTCTTTGTGTAAAAATAACAATTATAGGATTATTTC
CTCCTCTACTTTGGTATGCTCATATTTTAACTTAGCACCTATCCTCCTAT
TTCCAAATTTGACTTTATTTTGAGGTTTCATGTGGGCCTGGATTTTGTGA
ACTATTTAACCTAGTTGATTGCCAATTGGTAAGATGCCAGATATGTTTCT
CTCATTTTAAAAAATAAATAGTTGAAACTTAACAGTAATCCAATGCACGA
TGGGTTTTCACCATGAATCATTGACCATTTTCAAGTTCCTGCCACGCCAG
GGGTCCTGAGCCTTCCTAATACTGGGATACTTTCCTCATATTGCGGCAAG
ATAAATCATAAAATCATTGCTTTGCTACTTCATTACCGGGACACTTTTCT
ACTGTTAAGAATTATAACAGCAAAGGTCTGAAATGCAAGGATATCTGAAA
TGTGAAAACCTGGGAAAAAGTCCAGAAGATCCCCCAAAATGTCCAGGACC
CTCCTGTTTGGAAATGGGGGGGTTTAACCCTATGGGTCTGCGTTTCCATT
AACAGGGTATTATCTACCTCTCTAAACAATAGGACCCTTGTGCTCTTGGT
TAAAACCCTTTGTTTCCCAAATTTTTGGGCCTAACATTCTTTTGAAACTC
TTTGTATCTCTGGGAAATAGATTATCTTTCTATACCCTTTTTCCTGGAAG
GACTCCGTCCATTATTTTCTTTTTATAGGTAAATATTTTAGACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_i10.g1 MSMg01no049_i10.g1 CHROMAT_FILE:
MSMg01no049_i10.g1 PHD_FILE: MSMg01no049_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:38 2005
         (522 letters)



>mm_chr2_107389033_107389954
          Length = 922

 Score =  963 bits (498), Expect = 0.0
 Identities = 516/522 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaaatgaattgtgagtgacaaacctttgatacccctttcagcaagagaaaaccataa 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaaatgaattgtgagtgacaaacatttgatacccctttcagcaagagaaaaccataa 260

                                                                       
Query: 61  agatgatagtaagggagggatgacatttctggagaccagaattcgtcctagctagagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgatagtaagggagggatgacatttctggagaccagaattcgtcctagctagagaac 320

                                                                       
Query: 121 caaaataggtcacacttcttcttctaatagaatttgaatacacagggtcatatttaataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaataggtcacacttcttcttctaatagaatttgaatacacagggtcatatttaataa 380

                                                                       
Query: 181 ggatgcagttctatgtcatcttaatttttgaagattgatgtcatcaactaccaaacactg 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 ggatgcagttctatgtcatcttaatttttgaagattaatgtcatcaactaccaaacactg 440

                                                                       
Query: 241 attggcttactccagtgcaatttttctctcccagactggagggttgaaatccatgactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attggcttactccagtgcaatttttctctcccagactggagggttgaaatccatgactga 500

                                                                       
Query: 301 agttcttgtagagtcttactctctagaaagaacatcaggcttctccctagctttcagtgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttcttgtagagtcttactctctagaaagaacatcaggcttctccctagctttcagtgg 560

                                                                       
Query: 361 ctgtcgataatccatttcctagttcatcaacatgtggactccatcatttcgtctgaacat 420
           |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 ctgtcgataatccatttcttagttcatcaacatgtggactccatcattttgtctgaacat 620

                                                                       
Query: 421 ctctgctttttctttgtgtaaaaataacaattataggattatttcctcctctactttggt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 ctctgctttttctttgtgtaaaaataacaattataggattatttcctcctctaatttggt 680

                                                     
Query: 481 atgctcatattttaacttagcacctatcctcctatttccaaa 522
           |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 681 atgctcatattttaacttagcacctatcatcctatttccaaa 722


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 922
Length adjustment: 10
Effective length of query: 512
Effective length of database: 912
Effective search space:   466944
Effective search space used:   466944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)