BAC Information

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BAC

Clone NameMSMg01-049K21
Chromosome2 (Build37)
Map Location 38,229,152 - 38,229,524
singlet/doubletsinglet
Overlap genenone
Upstream geneRc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
Downstream geneNek6, Psmb7, LOC674251, Nr5a1, Nr6a1, Olfml2a, LOC624652, LOC100041071, 1700123D08Rik, Rpl35, Arpc5l, Golga1, A930041I02Rik, LOC100042584, Ppp6c, Vmn2r-ps2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049K21.T7 (MSMg01no049_k21.b1)MSMg01-049K21.TJ (MSMg01no049_k21.g1)
ACCAG279040AG279041
length1,1211,299
length of high quality
(start - end)
---372 (80 - 451)
definitionCHROMAT_FILE: MSMg01no049_k21.b1 PHD_FILE: MSMg01no049_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:57 2005CHROMAT_FILE: MSMg01no049_k21.g1 PHD_FILE: MSMg01no049_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGGCGTAAGATATATAGGAAGGATCGGGAATAATTGAAAGCCATTTCCA
TAAAACAATCCTGAATCTGTGTGTGGTGTGTGCCCTTTTAATGTGGAGTG
TGTGTGAACCAAAAAATATAATATTTTTATATAAATTTAATAATTTTACT
TTTAAATATTATAATATTAAAATATTATTATATATATATAATTTAAAAAA
AAAAAAATTATAATAATAAAATTAATAAAATATATTATATATTTTACAAA
AAAAAAAATAATATATATTAAAAAAAACAATAATTTTTATTAAAAAAATA
TTAATTATTAACATATTTATAAAAAAATATATAAAATAAAATAAAAATAA
TTTTTTTTTTTCAAAAATGAAATACTAAATATTAATTTTTAAAAATATTT
CAAACTCATTTTTATTTAAAAATAATATAAATTTTAAAATAAATAACTTA
TTAAAAAAAACTATAATTCTTTACTAAATTCAACAAAATATAATAAATTA
ATTATAAACTAATATAATAATAAATATAATAATAATAAAATAATTTAAAT
TAATTAAATTTTATATTATAATTTATAAAATTACAAATAACTAATAAAAA
AAAAAAAATAAATATATAACTAACATATATCAAATTAAATATAACATAAT
TATATTTAAAAAATAATAAAAATATAATTATATTTTTTTTAATTACAAAT
TAAAATATACACAAAAATAAAATAAATACTTTATTTAATTAAAATAAAAT
ATATTTTAACACTAATAAATAATATATTTAAAATAAATAAATAAAAAATT
ATATTAATATTAAACTAATAATATTTTTAAATTTTAAAAATATAAATAAA
TTAAATATATTAAATTAATATAAAAATATATAATAATATTTATAAAAAAT
AAATTAAAATATTAATATAAAATATTAAATATATATTAATAAATATTATA
TTTAATATCCCCCCTAAAAAAATTTAAATATATCTATTATAAAAATTATA
ATAATATTTATATATATATAAATATTTATAAAATATTAAATATATTAAAA
AAAAATATATTTATAATATATTTATTAAAAAAAGAAAATTTTAATACCTA
TATAAATTAATTATTAAATAC
TTTTTTTCGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCCTTTGAGTACGGCATCCACCCATGTCTAGGG
ATTGAACCCCGCGCTTGGTACATGCTAGGCCAGCGCTCTACCAATTGAGC
TGCATTCCCACTCTGACCATTTGGGAAATCTGCAAGAGTGGCAGGAGAGC
TTGAACCCTTCCTCTGCACCCTCCTGCAGACCCTAGCCACCTTAAACACT
GCAGTCTGCTGCTGCTGCTGCCTGATCTTGCAACTCAGAAAGTCCTCCAT
TCCTCCTGAGAAGGCAGCCTCTTACAGCTCTCCACTTTCTCAGAAACCCA
TCTCCTGCTCCTCCGGTACATCCTCCACTTCTGCAAGATGCCAGAAGGGG
TTTGAACTGCCCATGTGCTGCAGCACGGTAGCTGGTATGGGGGGGGGGGT
GCCCCTCTTTTTTTCTTCTCTTTATCTCTTTTATTTTCTTATATTTTACT
TTTTTTTCTTTTTATTATTTCTTTTTTTTTATCTTTACTCTTTTCTTCTC
TTTCTTATTTTCCATTTCTCCTTCTCTTTCTATTTTTTTATTTTTCTCTA
TTCTTCATCTTCCTTCCCTTTTTTTCTTTCTTTTTTTTTTTTTTTCTTCT
CTCTTTCCTTTTCTTTCTTTTGTCACTTTTTCTCTACCTTTATTTTTTTT
CCATTTTTTTTTTCTTCATTTCCCTTTTTTCTCCCATTTATCCTATCTTT
ATTACTTCTTTCTTTTTTTTTTTTTCTCTCTTTTTTCTTTTTTTTCTTTC
TCTTTTCTTTTCTTCTCTCTTCACTTTCATATTTAATCTTATTCATACCT
TATACTTTTTTATATTTTTTTTTTTTTTATTCCTTTTTTTTCTATTATTC
ATCTATCCCTCTTCTTACATTTTTCCTTCTTTTTCCTTTTCTCTCTTTTT
TCTTCATTCTTTTATTCCTTACTTTTCCCTCTTTTTGTTCCTCTCCTTTT
CTCTTTATTTCTCTTTTTTCTTTTTTTTCTATCTTTCCCCTATTTTACAT
TTATTTCTTCCTTATTTTTCTTTCATTCTTATCTCCTCTCTCTTCTTCCT
TTATATTTTCTCTCTCTTCATAACCTACTCTCTATTGTAATTCTTTTTCT
TTCTCTTTTTTTTTTCCTTTTCCCTTTTTCTTTACTTCTCTTACCTTCTT
TTCTTCTATTACTACTTTCCCTCTTCTTCTTTTCTTTGCTCTCTCTTTTT
CCTTTTCCCTTCTTTCTTCCTCATTTTCCTATCAATACTTTAAACCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_k21.g1 MSMg01no049_k21.g1 CHROMAT_FILE:
MSMg01no049_k21.g1 PHD_FILE: MSMg01no049_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:57 2005
         (372 letters)



>mm_chr2_38228871_38229643
          Length = 773

 Score =  675 bits (349), Expect = 0.0
 Identities = 367/373 (98%), Gaps = 1/373 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcatccacccatgtctagggattgaaccccgcgcttggtacatgctaggccagcgctct 60
           |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||
Sbjct: 654 ggcatccacccatgtctagggattgaacccagggcttggtacatgctaggtcagcgctct 595

                                                                       
Query: 61  accaattgagctgcattcccactctgaccatttgggaaatctgcaagagtggcaggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 accaattgagctgcattcccactctgaccatttgggaaatctgcaagagtggcaggagag 535

                                                                       
Query: 121 cttgaacccttcctctgcaccctcctgcagaccctagccaccttaaacactgcagtctgc 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 534 cttgaacccttcctctgcaccctcctgcagaccccagccaccttaaacactgcagtctgc 475

                                                                       
Query: 181 tgctgctgctgcctgatcttgcaactcagaaagtcctccattcctcctgagaaggcagcc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 474 tgctgctgctgcctgatcttgcaactcaaaaagtcctccattcctcctgagaaggcagcc 415

                                                                       
Query: 241 tcttacagctctccactttctcagaaacccatctcctgctcctccggtacatcctccact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcttacagctctccactttctcagaaacccatctcctgctcctccggtacatcctccact 355

                                                                       
Query: 301 tctgcaagatgccagaaggggtttgaactgcccatgtgctgcagcacggtagctggtatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tctgcaagatgccagaaggggtttgaactgcccatgtgctgcagcacggtagctggtatg 295

                        
Query: 361 ggg-gggggggtg 372
           ||| |||||||||
Sbjct: 294 gggtgggggggtg 282


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 773
Length adjustment: 9
Effective length of query: 363
Effective length of database: 764
Effective search space:   277332
Effective search space used:   277332
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)