Query= MSMg01no049_o12.b1 MSMg01no049_o12.b1 CHROMAT_FILE:
MSMg01no049_o12.b1 PHD_FILE: MSMg01no049_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:24 2005
(795 letters)
>mm_chr2_51563076_51564270
Length = 1195
Score = 1487 bits (769), Expect = 0.0
Identities = 781/785 (99%), Gaps = 1/785 (0%)
Strand = Plus / Plus
Query: 12 gaattctttctcttatttt-ataccattatgaggctcttaatttctgtagctattgaata 70
||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 211 gaattctttctcttattttaataaaattatgaggctcttaatttctgtagctattgaata 270
Query: 71 cctgacgttaaaaataatcctaaatgaataacactgggcatattatcatcacaacaagga 130
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cctgaggttaaaaataatcctaaatgaataacactgggcatattatcatcacaacaagga 330
Query: 131 cattattaccctgaccagctgtttgctgcttctctcttgcaatattggcattggggtttt 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cattattaccctgaccagctgtttgctgcttctctcttgcaatattggcattggggtttt 390
Query: 191 tgagtctttgatgccagcatagcttgtatgtttataacaagtaaataaatcaaacagtat 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgagtctttgatgccagcatagcttgtatgtttataacaagtaaataaatcaaacagtat 450
Query: 251 tgtccactagctgtttaatatgcaagtccaattgaatcaccatctttccctgtattacat 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tgtccactagctgtttaatatgcaagtccaattgaatcaccatctttccctgtattacat 510
Query: 311 gcacaaagacaaaggccacctggtgtttagtagcctcaggtatgttacaggtgtgctcag 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gcacaaagacaaaggccacctggtgtttagtagcctcaggtatgttacaggtgtgctcag 570
Query: 371 gtcttatcacttttttcccaacataatattgtactaatatttgggaattttgcacaatgc 430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtcttatcacttttttcccaacataatattgtactaatatttgggaattttgcacaatgc 630
Query: 431 accccaatcacactcacttcccattctttccaggtccaccctcacacccttgcaagcccc 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 accccaatcacactcacttcccattctttccaggtccaccctcacacccttgcaagcccc 690
Query: 491 ccctccccccacacacacacacaccaacaatccacacagtcaaatttgcactgaccatac 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 ccctccccccacacacacacacaccaacaatccacacagtcaaatttgcactgaccatac 750
Query: 551 actcactggagcattgtcaaattcccagtggccagccccttaaagaaaatagtcctttcc 610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 actcactggagcattgtcaaattcccagtggccagccccttaaagaaaatagtcctttcc 810
Query: 611 cagccctcacaccacccccaccaaaagccatcaatgtgcaccctgctactcagtctatgg 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 cagccctcacaccacccccaccaaaagccatcaatgtgcaccctgctactcagtctatgg 870
Query: 671 ggtttgtgtgaatggctcacaggactctgaccttagacagtactgacactcatcttatag 730
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ggtttgtgtgaatggctcacaggactctgaccttagacagtactgacactcatcttatag 930
Query: 731 gtactaacttcatagacttggggattctttgcatttatatatgataatcaccaaaactat 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gtactaacttcatagacttggggattctttgcatttatatatgataatcaccaaaactat 990
Query: 791 agtag 795
|||||
Sbjct: 991 agtag 995
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 795
Length of database: 1195
Length adjustment: 10
Effective length of query: 785
Effective length of database: 1185
Effective search space: 930225
Effective search space used: 930225
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no049_o12.g1 MSMg01no049_o12.g1 CHROMAT_FILE:
MSMg01no049_o12.g1 PHD_FILE: MSMg01no049_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:24 2005
(664 letters)
>mm_chr2_51590505_51591568
Length = 1064
Score = 1253 bits (648), Expect = 0.0
Identities = 660/664 (99%)
Strand = Plus / Minus
Query: 1 gatcccttgggctggttctattcttttctcctttttcttctcctgcatttcactagtgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gatcccttgggctggttctattcttttctcctttttcttctcctgcatttcactagtgtc 805
Query: 61 tgctttgattctgattttttttttttggagagatttactcagtattttcctcaaattctt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 tgctttgattctgattttttttttttggagagatttactcagtattttcctcaaattctt 745
Query: 121 tcattgacattttaaccttgctcttttcatgcaaaaacactttgtgttttgtttctggaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tcattgacattttaaccttgctcttttcatgcaaaaacactttgtgttttgtttctggaa 685
Query: 181 tcttctttccactgtgctttcttatttttttccccagacatggcaggattcacgctttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcttctttccactgtgctttcttatttttttccccagacatggcaggattcacgctttct 625
Query: 241 aagtgtgctaagtttgatcacatgcttgtagtcacccctcccgcagcaccacctctggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagtgtgctaagtttgatcacatgcttgtagtcacccctcccgcagcaccacctctggtc 565
Query: 301 ctttcaggacagaacaggtttgttgcttgttaacagtggcctgactgcttgctgctactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctttcaggacagaacaggtttgttgcttgttaacagtggcctgactgcttgctgctactg 505
Query: 361 tgtacctcaacaagttagagatttacaacaccttaatgcaatctcacccccttttagtgt 420
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtacctcaacaagttagagatttagaacaccttaatgcaatctcacccccttttagtgt 445
Query: 421 ttgaacaattatcgctgtcaatgtttgaaagctaaccactctttgaatcacatgacaagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgaacaattatcgctgtcaatgtttgaaagctaaccactctttgaatcacatgacaagg 385
Query: 481 atcctgtcttgcgcagcccacacccccctgtgttagcattcattccctgcacccactgtc 540
||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 atcctgtcttgtgcagcccacacccccctgtgttagtattcattccctgcacccactgtc 325
Query: 541 tagctctccgtttacgtcctcacttccaccctgcatcttgaatcatagtccttctgtccg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tagctctccgtttacgtcctcacttccaccctgcatcttgaatcatagtccttctgtccg 265
Query: 601 aagaaggttctggattatttgtcttgagtcacctgcactggcaacaaattctccaaggtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 264 aagaaggttctggattatttgtcttgagtcacctgcactggcaacaaattctcaaaggtt 205
Query: 661 tgtc 664
||||
Sbjct: 204 tgtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
