BAC Information

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BAC

Clone NameMSMg01-050C08
Chromosome2 (Build37)
Map Location 84,549,776 - 84,550,350
singlet/doubletsinglet
Overlap geneZdhhc5
Upstream geneItgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725, Calcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19
Downstream geneClp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050C08.T7 (MSMg01no050_c08.b1)MSMg01-050C08.TJ (MSMg01no050_c08.g1)
ACCAG279326AG279327
length1,2751,249
length of high quality
(start - end)
553 (37 - 589)381 (72 - 452)
definitionCHROMAT_FILE: MSMg01no050_c08.b1 PHD_FILE: MSMg01no050_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:03 2005CHROMAT_FILE: MSMg01no050_c08.g1 PHD_FILE: MSMg01no050_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGA
GGCAGAGGGAAAACATTACAAACAAAGCCAACCTGGTCTACTTATGGAAT
GCCACCCCAGCATGGGCAACATAGTGATACTGTGTCTCAAAACAAAAAAA
GACAACAACAACAACAACAACGCCTCTCTTAGGTACTTAGCTTTTACAAT
TCTAGTCTGTGTCTCAGACATGCCAGATGTGATTGCTATTTGAAAACACT
TCAAAGTCAGCACAGCCTGGTGGTGCAACCCTTTGATCTCAGCACCTGAG
AGGCAGAGGCAGGCGGATTATGTGAGTTAAACGATAGCCTGGTCTACATA
GCAAGTTCTAGGACAGCCAGGGCTCTGAAGAGGTTCTGTCTCAAAAATAA
AAAACCAACAAAGCACATAAAACAAAAAAAAAACAACAAAAAGACTTAAG
TCAATTCTAGTTCTCTTTTGTCATCTAAATTTCTCGAAGCCTGTGTTTTC
CTACTTCCTTCCTACGTTTAGTATCACCTATGATGGAACTAGATAGCCAA
ACATGAAGACATCCATGAGCTCAAAAGACAGGAAGTAGAGGAAACTAACC
CAGTAAGGTCAGGTAACTAATTGACCCTCCAAATCACTGACACTGAAGAA
ATAGTCTCTCAGTTTCCATGGCGTGACCCTCCCCCCGTCAAATGCCACTC
TGGAGAAAATTCACGTCTAGGCAAAGAACAATGTTGTAACTCCCACTACA
AATATGGCGTTTCGCTGAGACCGGTCACATACTTGCTTGGGTTTGAACCT
CTTTCCACACTCTGCGTCTTATGTTGGAACCTCTGATGTAAATAAGTTCA
CCGGCCCTTATATCCCAAGTTCCCTTATATTGGCCTTAATTCAACACTAA
AATTGGCTATGACTCTTATTCTTACAGTATATAATTCTGGTTATAAATCA
CTTATCATGTTTTCAATTTTTCACCCTTTTCTCCTCTTCCCAAATTTAAA
TTTGTATAGGCTATAAATTACTCCTATATTATAACGCATAACCTCCTGGT
CATACTCTATTATTTTCCAATCTTTCATTTTTTCATACCCATAACTTCAC
TCTTTATTATTATCCATTCTAATTCTTCTAACTACTACTTCTTACAATAA
CTCACAACCTCTTCCTTCCTTCTATGTATCTATTTTCATATTCTATTATA
TATTATCTCCGTCCTTATCCAATATCNCTATTCCTTCTGATTCTTCTCAC
ATTATTCCTNCTCTCTTATATATAT
TTTTTAGAGGTGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTGACTGAGTCCACGTGGGGTGCTTAGA
GCTGTGTCTGCCTTCTGGGAAGCAATCGATACTTGTTAGCGATGATGAAT
AATTCATTTCATAGATGAGAAAGCTGAAGCCCGCCAGATAGTCAACCAAG
ATCATGCAGCCAATGAGGAGTGAAGGTATAATTCCGTATCCCACAGCTTC
CTTCAGCTACAAACATCTCTCCTCAGACAAGCTCCTGCTTCTTTTTTATG
AACACATACTAATTGTACATACTGATGAGACTGTGAATTTTCATACATGT
ACATAACATGCAGGGGTCATTTCCTCTCAGCCTTCTCCACCCCACGCCCC
TCCCTGTAGCAGCTGTTCCAGCCTCTGGGAGCCACTTGTCTGGTTTTCAG
AGTGTTTTTCTCTCCCCCTCTATGAGAGAGAACATCCTGTCCATGATTCT
TCCTGCGCCTGGCTTATCTCATTTGGCATGGTGGCCTCCCGCCTCATCAT
TTCACTGCAAATGACCGCACTGCACTTTTAAGATTTGTAGCTCAAGAGTC
AGTTTCTTATTCCTGAATGCTGTAAGACGCTGAAAGAAAGTTCCTTTTTT
TTTTCATGAAAATACCCACCCACCTAGCAGAATGGGTAAAAATCCAAAAA
AAAAAATGATACATCAGGGTAAGGCGAGGCTGCATCAACCCAAGGGTTGT
GCAGGAGCAGTTGCTTGGTAAGTGTTTGGCTGTTTCCAGTGACGTTTAAT
AATACATCCTCTGAATCATTCGGGGTTCAACCATAAAAATTAGACCCTTT
CTTTGTGTGTGCTTTGTCTTTTTTTATACTTCTATCTTTCAACATTCTTC
TCTTACTTCCTACTATATTTTCTTTTTTTTTTTTTCTCTTCTTATTAATT
TTTCTTTATCCTTTTTTTCTCATTCTCTTTTTTCTTTTTCTTATCTCCTT
CTTCCTTTCTCCTTCTTATCTCTCTGTTTCTTTATTTTTTTTTCCCTTTT
TCTTTTTTTATTCCCCTTTTTCTTTNTTTCTTACTCTCTTTCTCTTCTTT
CTCTTTTTTCCTTTTTCTCTTCTTCTTATTTTTTTACACTACTGCACTCT
TACCTATCTTATCTTCTATACTTGTCTCCATTTATTCTTCCTTTCTTTTC
CCATTTACATTTCATATGTTTCTCACCTCATTCTCTCTTCCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_c08.b1 MSMg01no050_c08.b1 CHROMAT_FILE:
MSMg01no050_c08.b1 PHD_FILE: MSMg01no050_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:03 2005
         (553 letters)



>mm_chr2_84549580_84550531
          Length = 952

 Score =  859 bits (444), Expect = 0.0
 Identities = 533/580 (91%), Gaps = 36/580 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggaggcagagggaaaacatt---acaaacaaagccaacctggtctacttatgg 61
           ||||||||||||||||||||||  |||   ||||||||||||||||||||||||||||||
Sbjct: 197 gaattcaggaggcagagggaaa--attaacacaaacaaagccaacctggtctacttatgg 254

                                                                       
Query: 62  aatgccaccccagcatgggcaacatagtgatactgtgtctcaaaacaaaaaaagacaaca 121
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aatgccaggccagcatgggcaacatagtgatactgtgtctcaaaacaaaaaaagacaaca 314

                                                                       
Query: 122 acaacaacaacaac------gcctctcttaggtacttagcttttacaattctagtctgtg 175
           ||||||||||||||      ||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acaacaacaacaacaacaatgcctctcttaggtacttagcttttacaattctagtctgtg 374

                                                                       
Query: 176 tctcagacatgccagatgtgattgctatttgaaaacacttcaaagtcagcacagcctggt 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 tctcagacatgccagatgtgattgctatttgaaaacacttcaaagtcagcacagcctggt 434

                                                                       
Query: 236 ggtgcaaccctttgatctcagcacctgagaggcagaggcaggcggattatgtgagttaaa 295
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ggtgcaagcctttgatctcagcacctgagaggcagaggcaggcggattatgtgagttaaa 494

                                                                       
Query: 296 cgatagcctggtctacatagcaagttctaggacagccagggctctgaagaggttctgtct 355
            |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 495 ggatagcctggtctacatagcaatttctaggacagccagggctctgaagaggttctgtct 554

                                                                       
Query: 356 caaaaataaaaaa-ccaacaaagcacataaaacaaaa--aaaaaacaacaaaaagactta 412
           ||||||||||||| ||||||||||| ||||||  |||  ||||||||||||||||| |||
Sbjct: 555 caaaaataaaaaaaccaacaaagcaaataaaa--aaaccaaaaaacaacaaaaagattta 612

                                                                       
Query: 413 agtcaattctagttctcttttgtcatctaaatttctcgaagcctgtgttttcctacttcc 472
           |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 613 agtcaattctagttctcttttgtcatttaaatttcttgaagcctgtgttttcctacttcc 672

                                                                       
Query: 473 ttcctacgtttagtatcacctatgatggaactagatag-----c-----c---------a 513
           |||||| |||||||||||||||||||||||||||||||     |     |         |
Sbjct: 673 ttccta-gtttagtatcacctatgatggaactagataggaaaacatgaactagataggaa 731

                                                   
Query: 514 aacatgaagacatccatgagctcaaaagacaggaagtaga 553
           |||||||||||||| ||||| |||||||||||||||||||
Sbjct: 732 aacatgaagacatctatgagttcaaaagacaggaagtaga 771


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 952
Length adjustment: 10
Effective length of query: 543
Effective length of database: 942
Effective search space:   511506
Effective search space used:   511506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)