Query= MSMg01no050_e23.b1 MSMg01no050_e23.b1 CHROMAT_FILE:
MSMg01no050_e23.b1 PHD_FILE: MSMg01no050_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:26 2005
(755 letters)
>mm_chr2_148669981_148671135
Length = 1155
Score = 1253 bits (648), Expect = 0.0
Identities = 663/668 (99%)
Strand = Plus / Minus
Query: 88 ctgcctgtggattatcaggatgtagctttcaactacttctccagcatcattcctggcatg 147
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1155 ctgcctgtagattatcaggatgtagctttcaactacttctccagcatcattcctggcatg 1096
Query: 148 cctcttgctatgctccctaccatgatgaaaacagactatgcttccaaaactctaagcaag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1095 cctcttgctatgctccctaccatgatgaaaacagactatgcttccaaaactctaagcaag 1036
Query: 208 gccccaattaaatgctttctcttataagaattgcagtggtcatggtatatcttcacatca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1035 gccccaattaaatgctttctcttataagaattgcagtggtcatggtatatcttcacatca 976
Query: 268 atagaacagtgactaagacacttactaataatgaactttagaaagactactgtcccctag 327
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 975 atagaacagttactaagacacttactaataatgaactttagaaagactactgtcccctag 916
Query: 328 atgcttattgtaacccaatgtttatccttcccccactcccagactactgacctagtagca 387
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 915 atgcttattgtaacccaatgtttatccttcctccactcccagactactgacctagtagca 856
Query: 388 taacaagagtcagatatttttcatttttcattaacctcaagaaatagtgatctttccagt 447
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 855 taacaagagtcagatatttttcatttttcattagcctcaagaaatagtgatctttccagt 796
Query: 448 ctatgagccgtgctctgtgatagattcagaccacaccacaagtaggagtcacctgaaaag 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ctatgagccgtgctctgtgatagattcagaccacaccacaagtaggagtcacctgaaaag 736
Query: 508 tcattgagcagagatttactaaattctagatgaataagaataagaacaacatacctaatg 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tcattgagcagagatttactaaattctagatgaataagaataagaacaacatacctaatg 676
Query: 568 ataaagaaaatggaagtgttctcatccaccagctatcagtttgcagagcggtgcctctag 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ataaagaaaatggaagtgttctcatccaccagctatcagtttgcagagcggtgcctctag 616
Query: 628 acaggagttatgctactttgaactcaaacatcctggtttctcagtagcattttacgcctg 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acaggagttatgctactttgaactcaaacatcctggtttctcagtagcattttacgcctg 556
Query: 688 ggagagctccagaactgcagttctcacgtcaatgcccccaaacaaactgtttgcgttttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 555 ggagagctccagaactgcagttctcacgtcaatgcccccaaacaaactgtttgggttttt 496
Query: 748 ctagtttt 755
||||||||
Sbjct: 495 ctagtttt 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 755
Length of database: 1155
Length adjustment: 10
Effective length of query: 745
Effective length of database: 1145
Effective search space: 853025
Effective search space used: 853025
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no050_e23.g1 MSMg01no050_e23.g1 CHROMAT_FILE:
MSMg01no050_e23.g1 PHD_FILE: MSMg01no050_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:27 2005
(746 letters)
>mm_chr2_148629976_148631118
Length = 1143
Score = 1369 bits (708), Expect = 0.0
Identities = 732/742 (98%), Gaps = 5/742 (0%)
Strand = Plus / Plus
Query: 6 gatggcactgttctttcccagaccacgtggaaagagaaaa-gtagagagatgagagagag 64
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 206 gatggcactgttctttcccagaccacgtggaaagagaaaaagtaga----tgagagagag 261
Query: 65 aaggactttcatatttcccaaagcttttaggagttaatctaaaacatttttaatccaagt 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 262 aaggactttcatatttcccaaagcttttaggagttaatctaaaacatttttaatccaaat 321
Query: 125 ttcccccattgtttattgacagatcacagaccgaatggaataccaaattgatgttcagat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcccccattgtttattgacagatcacagaccgaatggaataccaaattgatgttcagat 381
Query: 185 ctcccgcagtaattgcaaaaaacctttaaacaatactgaaaactgcatccctcaaaaaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctcccgcagtaattgcaaaaaacctttaaacaatactgaaaactgcatccctcaaaaaaa 441
Query: 245 acccgaactggaaaaagtaagtgactttaagtcccatctagggttatcaaagcttcaagg 304
||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||
Sbjct: 442 acccgaactggaaaaagtaagtggcttcaagtcccatctaaggttatcaaagcttcaagg 501
Query: 305 tagttgggaaatcttagggcgcccagcctaagatctccaagggttctggattgctccccg 364
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tagttgggaaattttagggcgcccagcctaagatctccaagggttctggattgctccccg 561
Query: 365 cttggagtcccagaaggcccaccttgccatcttcagagtagaagatgcagcagcatcaag 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cttggagtcccagaaggcccaccttgccatcttcagagtagaagatgcagcagcatcaag 621
Query: 425 gtcactcctaaccccaaaactcccatcaactctggacttttaaggcagaaaaaactattg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtcactcctaaccccaaaactcccatcaactctggacttttaaggcagaaaaaactattg 681
Query: 485 aaatttgttttctgaaagtctgtccccttggactgagactaatttgtccagctaatgagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 aaatttgttttctgaaagtctgtccccttggactgagactaatttgtccagctaatgagg 741
Query: 545 tgaatcattcatgctgtgcagtcatgaaggaagtctgcgtggacaatcatcttaacttag 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tgaatcattcatgctgtgcagtcatgaaggaagtctgcgtggacaatcatcttaacttag 801
Query: 605 agcacaggtactagtcatctgcagcaggcctgttccaaatacaggagattagacaatatc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 agcacaggtactagtcatctgcagcaggcctgttccaaatacaggagattagacaatatc 861
Query: 665 tagaccagatagcatcccaagctttctctgcacactcaagttttaaaaggcttatcacat 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 tagaccagatagcatcccaagctttctctgcacactcaagttttaaaaggcttatcacat 921
Query: 725 ccagagagtagtaggtactcac 746
||||||||||||||||||||||
Sbjct: 922 ccagagagtagtaggtactcac 943
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 746
Length of database: 1143
Length adjustment: 10
Effective length of query: 736
Effective length of database: 1133
Effective search space: 833888
Effective search space used: 833888
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
