BAC Information

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BAC

Clone NameMSMg01-050G13
Chromosome2 (Build37)
Map Location 113,121,690 - 113,122,413
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
Downstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050G13.T7 (MSMg01no050_g13.b1)MSMg01-050G13.TJ (MSMg01no050_g13.g1)
ACCAG279497AG279498
length1,1931,217
length of high quality
(start - end)		737 (39 - 775)682 (78 - 759)
definitionCHROMAT_FILE: MSMg01no050_g13.b1 PHD_FILE: MSMg01no050_g13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:41 2005CHROMAT_FILE: MSMg01no050_g13.g1 PHD_FILE: MSMg01no050_g13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCCTTTNNNNACAGTGGGCGCTATAGACTCCTATAGGGAGAGGATCCG
CGGAATTCTTTGGCTCCTTCTTCTACCCTTCGGAGGCAGACTCACCTGTA
CAGCCACATCAGAACATGCTCATTATAAACAGTGTGCTGTGGCAGAATCT
TCAGTGGACAGCCACACCCTCTAGGTACCACTGGTTGACAAGTTGTGATG
AAAATATTCTTCCCATTAAACTGCATCTTTTGATTTCCCTTAAGGACACC
ATACAAATTCACCCTCTCTATGAAACCTTCCATCACAAATCATTCCTGGC
TCATTGCCTCAAAGAGATAATATAATATATATGTTGTGTGAGAACACATT
TCCTAATGACACAAAGACGCTCAAACCCACATTTGAAGCTCCAAATGTCT
ATTGCTATACTTAATATTATGGTCCATATGTTTCCTTTGGTTTATTCTCT
TTCCTTTAGTTTTATTCTCCAATTCACTTTTCACATGGTCCTGAACTTGA
ACTTATTTTTTCATTATTTCACATTGAGCATTTTATCCTAAATATGGGTA
TAGTTGACTCAGATAGATATAGGTATCGACCTCATTGTAGATAATAAATA
AGGATACGAGAGGGGGAACAGGGCTGACCGTGATGGGACTCAGACTTTGG
ATATCTGTTCTTCTCATTTCCAGGTGAAAGGATATGAGCAGGTTATTGAA
CCCAATAAGCACTGGTTTTCTAATTTACAAAAATGCAAATGATGTGTGCC
TACTCCATAACAGTGAGATGAGGTTAAAAGGGGTGTGCCACAAAGTCTGC
ATGACATAAATACTTAATAAATTATAACTATAGTAGCCGTCATTGTTGCA
ACTACGGTAGNCTTCATTGTTGCAAAGCACCTAAATTGACTCATCCTCCT
TGAAGTTCCTTTCTTTATCATCATGAAACTGAAATTCCCTCAGGCTGGGT
TCTTCACCCAAGGTCCTTTGCCCTAACCTTTCTTTGTTTCCAGTTTATCT
GGTCGTGGATTCTTTGGCTTTCCCGCAACCCTTAGAGAATTCTGGGCTTT
TCCCCTGGGAAAACTGTGTGTTTGGAAAAAACCTTTGGCCTTTTGGCCCT
CCTGGGTAACCCTCTTCAGTCCATGGGGTTCTTAACCCTAAAAATATCTC
CAAAAATTTATTTTTAAGGCCCTTATATTTTGTAAACCTTTTA

ATTTTATTACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTGCTGGGTGGGGTAGGGGGAATTTCTCTG
GGAACTTCCGATCTTGTTATGGTTATTTTTCTGAGAACAGTTCATTTTGT
TTTGGCAGCTGTAGACTTAGTCATGTTGACAGCTATGTTTCTGAAAGTCC
CTTCAGAGGAGAAGGGGCTGGGTGGTCTTGAATTTATTTTGGATTCTACA
AGACCACCATAGACTAAAGCTATATTAACAGCATAAGCAACAGAACACTT
ACAAGTTCATGAAAACTGAATAACTCACTACTGAATAAAAAAAATCAAGA
AATAAAATTAAAGACTTCCTAGAATTGAATTAAAACAAACACACAGCATG
TCTAGGTATATGGAATACAATGAAGGTGGTTCTAGGAGGCAAGTTCATAG
CACTAAGTGCCTACATTAAACAATTAGAGAGTTGTCATCGTACTAACTTA
AAAGCACACCTGAAAGCTCTAGACTCTGGGCTGAAATCAATAAAATAGAA
ATAAAACAAACAAAAAAATTACAAAGAATCATTGAAACAAAATTTGTTCT
CAGATCAGGTGATCCAGCCCCCACCCCACCCCGACACATACTCAGAAACA
GCTTTATTCCTAGAAGGTCCATCATAACCAGGCTCACATGTGAGATATTC
CCTTCCCAATACCTGACCTAACTGAGAGCCCCCCATAGGGGGTATCATCT
TGCCAGAGCCACATGGGGCTGATCAAGTGCTCCAGCCCCCCTCCCTTGCC
CAACTGGATTTAACAGAGAACCTACAGAACATTTCCCCCTAAAACAAAAA
GAATATTACGTCCTTCTCAGCATCTCATGGTAACCTTCTCTAAAACCCAC
CCTTATAATTCCGACCCCAAACAAGCCTTCCACAGATTCCAGAAAGATTG
GAAATAATCCTATGGCTTTCCTTTCAGAATCACCCCTGAATTAAAAACTT
GGTCTTAAATAAATAACAAAACCCCAACCGAAAAAGTCCCCCATACTTCA
TTGGGAAACTTGAAAAAACTGGCCTAACTCCTTTGAAAAAATTTGTGCCC
GGGTAAGAAATTCTATGAAAGGCAAATTTATAAGAACTTTTCTTAAAAAT
TTTAATGGAAAGTGTGAAAGGTCACCCGCATTATTCCACAAATTTATGTG
GGATAACCCTTTGTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_g13.b1 MSMg01no050_g13.b1 CHROMAT_FILE:
MSMg01no050_g13.b1 PHD_FILE: MSMg01no050_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:41 2005
         (737 letters)



>mm_chr2_113121476_113122613
          Length = 1138

 Score = 1338 bits (692), Expect = 0.0
 Identities = 716/726 (98%), Gaps = 5/726 (0%)
 Strand = Plus / Minus

                                                                       
Query: 15  gaattctttggctccttcttct---acccttcggaggcagactcacctgtacagccacat 71
           ||||||||||||||||||||||   || |  | |||||||||||||||||||||||||||
Sbjct: 938 gaattctttggctccttcttctaacacac--cagaggcagactcacctgtacagccacat 881

                                                                       
Query: 72  cagaacatgctcattataaacagtgtgctgtggcagaatcttcagtggacagccacaccc 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 cagaacatgctcattataaacagtgtgctgtggcagaatcttcagtggacagccacaccc 821

                                                                       
Query: 132 tctaggtaccactggttgacaagttgtgatgaaaatattcttcccattaaactgcatctt 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tctaggtaccactggttgacaagttgtgatgaaaatattcttcccattaaactgcatctt 761

                                                                       
Query: 192 ttgatttcccttaaggacaccatacaaattcaccctctctatgaaaccttccatcacaaa 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 760 ttgatttcccttaaggacaccatacaaattcaccctctctatgaaaccttctatcacaaa 701

                                                                       
Query: 252 tcattcctggctcattgcctcaaagagataatataatatatatgttgtgtgagaacacat 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tcattcctggctcattgcctcaaagagataatataatatatatgttgtgtgagaacacat 641

                                                                       
Query: 312 ttcctaatgacacaaagacgctcaaacccacatttgaagctccaaatgtctattgctata 371
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttcctaatgacacaaagacgctcaaacccacatttgaagctccaaatgtctattgctata 581

                                                                       
Query: 372 cttaatattatggtccatatgtttcctttggtttattctctttcctttagttttattctc 431
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cttaatattatggtccatatgtttcctttggtttattctctttcctttagttttattctc 521

                                                                       
Query: 432 caattcacttttcacatggtcctgaacttgaacttattttttcattatttcacattgagc 491
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 caattcacttttcacatggtcctgaacttgaacttattttttcattatttcacattgagc 461

                                                                       
Query: 492 attttatcctaaatatgggtatagttgactcagatagatataggtatcgacctcattgta 551
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 460 attttatcctaaatatgggtatagttgactcagatagatgtaggtatcgacctcattgta 401

                                                                       
Query: 552 gataataaataaggatacgagagggggaacagggctgaccgtgatgggactcagactttg 611
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gataataaataaggatacgagagggggaacagggctgaccgtgatgggactcagactttg 341

                                                                       
Query: 612 gatatctgttcttctcatttccaggtgaaaggatatgagcaggttattgaacccaataag 671
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 340 gatatctgttcttctcatttccaggtgaaaggatatgaacaggttattgaacccaataag 281

                                                                       
Query: 672 cactggttttctaatttacaaaaatgcaaatgatgtgtgcctactccataacagtgagat 731
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 cactggttttctaatttacaaaaatgcaaatgatgtgtgcctactccataacagtgagat 221

                 
Query: 732 gaggtt 737
           ||||||
Sbjct: 220 gaggtt 215


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 737
Length of database: 1138
Length adjustment: 10
Effective length of query: 727
Effective length of database: 1128
Effective search space:   820056
Effective search space used:   820056
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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