Query= MSMg01no051_j12.b1 MSMg01no051_j12.b1 CHROMAT_FILE:
MSMg01no051_j12.b1 PHD_FILE: MSMg01no051_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:31 2005
(262 letters)
>mm_chr2_47202402_47203062
Length = 661
Score = 383 bits (198), Expect = e-111
Identities = 233/250 (93%), Gaps = 11/250 (4%)
Strand = Plus / Minus
Query: 18 gaattccatgtttccagattcttctgttgaagctcatgtttgacagtttgccgttgctct 77
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 461 gaattccatgtttccagattcttctgcggaagctcatgtttgacagtttgccgttgctct 402
Query: 78 atccttaatgtgagataact-----acccccaataaggggtttactttcacccatgcttt 132
||| ||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 401 atcaataatgtgagataactaggaaa-----aataaggggtttactttcacccatgcttt 347
Query: 133 ggagtttctctaagtgtttgctttgctccattgccttggggactaatagcacactaccac 192
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ggagtttctctaagtgattgctttgctccattgccttggggactaatagcacactaccac 287
Query: 193 accatggcaattgcatgatgaagaacatcagtatctcttgcttgggaagtaacagagcaa 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 286 accatggcaattgcatgatgaagaacatcagtatctcttgcttgggaagtaacagagaaa 227
Query: 253 taaagaggct 262
|||||||||
Sbjct: 226 -aaagaggct 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 262
Length of database: 661
Length adjustment: 9
Effective length of query: 253
Effective length of database: 652
Effective search space: 164956
Effective search space used: 164956
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no051_j12.g1 MSMg01no051_j12.g1 CHROMAT_FILE:
MSMg01no051_j12.g1 PHD_FILE: MSMg01no051_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:31 2005
(287 letters)
>mm_chr2_47082118_47082802
Length = 685
Score = 497 bits (257), Expect = e-145
Identities = 279/291 (95%), Gaps = 10/291 (3%)
Strand = Plus / Plus
Query: 1 cagtgccatttattagtgcacatttctatgatattagtcacaagatctcatgtaatactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgccatttattagtgcacatttctatgatattagtcacaagatctcatgtaatactg 260
Query: 61 acttagaattaaattgaaaatttgcaacattttaaagtgtgataactgtaattctataga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acttagaattaaattgaaaatttgcaacattttaaagtgtgataactgtaattctataga 320
Query: 121 ccagagaagaattgaccattgtaagcagaatattctggctaatgattcaaagtaatcttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagagaagaattgaccattgtaagcagaatattctggctaatgattcaaagtaatcttt 380
Query: 181 aactgtcaaaattagtttaagaaataaaataacttcctcttcttttgtagttttctcagt 240
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct: 381 aactgtcaaaattagtttaagaaataaaataacttc---ttcttttgtatttttctcagt 437
Query: 241 gtattt----attttgattatcaattccatatgtttgtattttctaaaaat 287
||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gta---gaaaagtttgattatcaattccatatgtttgtattttctaaaaat 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 685
Length adjustment: 9
Effective length of query: 278
Effective length of database: 676
Effective search space: 187928
Effective search space used: 187928
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
