BAC Information

Click to search

BAC

Clone NameMSMg01-051K16
Chromosome2 (Build37)
Map Location 54,116,536 - 54,116,856
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666872, LOC666876, LOC207933, Rprm, LOC666913
Downstream geneLOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051K16.T7 (MSMg01no051_k16.b1)MSMg01-051K16.TJ (MSMg01no051_k16.g1)
ACCAG280359AG280360
length1,4021,342
length of high quality
(start - end)
144 (132 - 275)321 (76 - 396)
definitionCHROMAT_FILE: MSMg01no051_k16.b1 PHD_FILE: MSMg01no051_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:40 2005CHROMAT_FILE: MSMg01no051_k16.g1 PHD_FILE: MSMg01no051_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:51:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCTATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TTTGTTTAGCTCTGCACCTTTTATTTTATTGGGTTATTTGAATTTCTGGA
TTTCAGCCCTTTAAGCTCTTTGTACCCCCTGGATATTAGTCCCCTATCAG
ATTTAGGATTGGTAAAAATCCTTTCCCAATCTGTTGGTGGCCTTTTTGTC
TTATTGACAATATCTTTTATGTTACAGAAGCTTTGCAATTTTATGAGGTT
TCATTTGTCGCTTCTTGATCTTACAGCACAACCCAAGTCATTGCTGCTCT
TTTTCGGAATTTTTCCTCTGTGTCTTATAACTTTGATGCTCTTTCCCTTT
TTCTCCTCCATAAGTCTCTGCGTTTCTGTTTTTACGCGGAGTTCTTTTTT
TTTTTTAATTTCTCTTTTTTCTTTTTTTGATTTCTTTTTTACTCCCTTTT
TTTTCCCCCTCCCCTTATTTTTTTTTTTCTTTTTCTTAATTTAAATTTTT
TTCTTTTCTCTTTTTTTTTTTGCTTTCTTCTTTCTTTTTTTTTCTTTTTT
CTCTTTTTTTTTCATATTTTTTTTTTTTTTTATTTTTCTCTTTTTATTTT
TTTCCTATTTCTTTTTTTCCCTATCTTTTTTTTTTTATCCTTCTTCTTTT
CTTTTTTTTTTTTTTTTTTTCCTTCTTTTTTTTTTTTCTTTTTTTTTTTC
TTATTCTTATTTTTCTTTTTTTCTTTTCTTTTTCTTTTTCCTCCTTTTCT
TTTTTTTTTTTTCCCTTTTTCTTTTTTTTTTTTTTTTTTATTTTTTTAGT
TTTCTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTCTTTCTTTTCTTTTCT
TTTTTTTTCTTTTTTTTTTTTTTCTTTTTTTTTCTTATTTTTTTTTTTTT
CTTTTCCCTTTTTTTCTTTTTTTTTTCCATTTTTCTTTTTTTTTTTTTTC
TTTTTCTTTCCTGTCCTTTTTTCTTTTCTCTCTCCTTCTTTTCTTTTGTC
TTCTTTTTTTCTATCTTTCTTTTTTTCTTTTTTCTTTTTTCCTTTTTTTT
TTTTTTTTTTTCCCCCTTGTTATATTTTTATTTTTTATTTTTTTTTATAT
TTTTTATTTTTCTTCTTTTTTAGTTTTTGATTTTTATTATTTTATTTTTT
CTCTTAGTATTCTCTCTCTCTTCACTTTCTTTTTTTATCTTTCATTTTTT
CCCTATTTTCTTTCTATTATTATGTTCTATTCTTTTCCTGTCTCTTCTTC
TTTTATTCCCTCTTCTTATCTTTTCTCTTTCTTTTTCTTNTATTTTTTTC
TTCTTTTTTCATGTATCTCTCTTATTCTATTTTATATTTTATCTTATATT
TCTTTTACTTTTTCTTTTTTCTTTTCCCCCTATTTTTCTTTTTTTTTTTT
TG
NNNCCGAGCTAGGTAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTTTGAGAGTATTGGGAACTAGAAAAGCCTT
TTACAACTCTGACAATTTGGAATAAGACCCACATTTTCAAACTCCTACAT
CAAACAGTATTTAGACATGTAATGTCCTTTAGAAATGGCCATGATTCTGG
ATTATTCAGCTTCCATTAGTCAAAAGCAAATACCAAAGAAGAATTCAGCC
AAGAGACCATCAACAGTTCTGCTAATTAGAATATTGGTTGCCTCTTCATG
GAGGGAGCTCTAAGAAGCACACTATGTCTGCTACTTCCATCAAACTACAT
GTGCACATCTTCTTTGCGTATCAGTTCTGCTTAGGAGCATCTATCATATT
TTTTTATGCTGTATGTCTAACTTTTGTTTGTTGTTGCAACTATTCCCCCC
TTTCTATTTCCCCCCCCCCTTTGCATATTCGTTCTTTTATTCACAATGCA
TTTTTCTTTATTATTTTCTTTTATTTATTATTCAATTTTCTTCTTTTTCT
TTCTTTTTTTTTTTCAATTTCTTTTTTATTTCCTTCATTTCGTCTTTTCT
CTTCTTTCTTTATTTTTTATCTCTTTCTTTTCTTCTTTATTTATTTTTTT
CTTTTTTTTCATTATTTTATTATTTTTTTTTTATTCTTCCTTTTTTTTTT
TTCTCTTTTTTTTATTTTTCTTTTTTTTCCCCTCTACTTTTTTTTTTTTT
TTCTCTCTCTATCTTTCTTTTTCTTTTCTTTTTTCTTTATTCTTAATTTT
CTTTTTCCTTTTTTTTCTACTTTCTTTTTTTTTTTTCCTTTTTTTTCTTT
TTTTCTTTTATTTTTATCTTCCCCTTTCTTTTTTTTTTTTTACTTTTTCT
CTTCTTTTCTTCTTTTCTCTCTTTTCTTTCCCTTTTTATTTTCTTTTTCT
CCTTCTTATTTCTTCTTTTTTTATTTCTCTTTTCTTTTATATTTTTATTT
TTCCCTTCCCTTTTTTTTTTTTTTTTTACTTTATTTTCTTCTTTTGTTTC
TTCTTTTCTTTCTTCCTTCCTCTCTTTACCCTCCTTTTTTTCTTTTTTTT
TTTTTTTCTATCTTTTCTTTATTTCTTTTTTTTTTCGTTATTATTATTCT
TCTTATCTTTTCTTTTTATCTTTTTATATATATTTCTATTTTTTTTTTCC
TTTTTTTTTTTTTTCTTTTTTCTTTCCTCTCTTCTATTATTTTTACTCTT
CTTTCCTCTCTTTCTTTTCCTATTCTTTTCTTTTTCATCAATCTTCCAAC
CTTTTTTCCTTTATTTTTATATACATATATTTTCTTTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_k16.g1 MSMg01no051_k16.g1 CHROMAT_FILE:
MSMg01no051_k16.g1 PHD_FILE: MSMg01no051_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:51:40 2005
         (321 letters)



>mm_chr2_54116336_54117056
          Length = 721

 Score =  559 bits (289), Expect = e-164
 Identities = 313/321 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagtattgggaactagaaaagccttttacaactctgacaatttggaataagacccacatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 521 gagtattgggaactagaaaagccttttacaactctgacaatttggaataagagttacatt 462

                                                                       
Query: 61  ttcaaactcctacatcaaacagtatttagacatgtaatgtcctttagaaatggccatgat 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ttcaaactcctacatcaatcagtatttagacatgtaatgtcctttagaaatggccatgat 402

                                                                       
Query: 121 tctggattattcagcttccattagtcaaaagcaaataccaaagaagaattcagccaagag 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 401 tctggattattcagcttccattagtcgaaagcaaataccaaagaagaattcagccaagag 342

                                                                       
Query: 181 accatcaacagttctgctaattagaatattggttgcctcttcatggagggagctctaaga 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 341 accatcaacagttctgctaattagaatattggttgcatcttcatggagggagctctaaga 282

                                                                       
Query: 241 agcacactatgtctgctacttccatcaaactacatgtgcacatcttctttgcgtatcagt 300
           |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 281 agcacactatgtctgctacttcaatcaaactacatgtgcacatcttctttgcatatcagt 222

                                
Query: 301 tctgcttaggagcatctatca 321
           |||||||||||||||||||||
Sbjct: 221 tctgcttaggagcatctatca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space:   222144
Effective search space used:   222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)