BAC Information

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BAC

Clone NameMSMg01-052B23
Chromosome2 (Build37)
Map Location 133,821,673 - 133,821,927
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043785, A430048G15Rik, Bmp2
Downstream geneHao1, Txndc13, LOC627897, LOC433478, Plcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052B23.T7 (MSMg01no052_b23.b1)MSMg01-052B23.TJ (MSMg01no052_b23.g1)
ACCAG280693AG280694
length712680
length of high quality
(start - end)
---253 (139 - 391)
definitionCHROMAT_FILE: MSMg01no052_b23.b1 PHD_FILE: MSMg01no052_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:38 2005CHROMAT_FILE: MSMg01no052_b23.g1 PHD_FILE: MSMg01no052_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATTTGCGGCCCTATACGACTCCTATATTTCGAGAATCCGCGGAAT
TCTCACCTGATTACCCCCAAGAGGCTGAGACGCACCTGAGAATTTTTTCA
TCATCCTTAATCATCACTGAACCCCAAATCAAAACTGCCCTGAGATTCCA
TCTCACACCAGGCAGAATGGCTAAGATAAAAAATTCAGGTGACAGCCGAT
GCTGGCGTGGATCTGCAGAAAGACGAACACGCCTGCGTGTCGTGGGTTTA
TTTGCTTCCTTGTACAACCACTCCGGAAATCTGTCTGGTTGTTCCTCACA
AAATTGGACATCTCACTACCAGAGCATCCTGTAATATCTCTTCTGGGCCT
CTCTTCACAATATGTTCCCACCCTTACGAAGGACACATGCTTCCACTATC
TTCATACCAGCCTCATTTATATCACCCTCAACCTAGGAAACAACCCACAT
GTCCCTCAACCTACAATTGTTTTACCCAAAACGCGTTACCTCTCCCTCAT
GATACTACTACCCCAATCACCCACAACCATTGTACTTCCCTAACCTTTTT
AACCCCATCGCCTCGACCCTGTAATCTCTTCTTTCTTGTTTGATCGTCCC
CCCACCCGCACCCAAATCCCCCCCTGCCTCCCCCCTCTTTTGCCTACCTG
TTATTATTACCCCCCCCACCTCTACTATCTTCCCACTCTATCATATTCCC
CCCTTTTTCCCG
CCATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAAACAAAGTTTTCCTCTGTCTCCTATA
TCACAAACACATAAAAATTGATCCCTTTTGAGTATCAGAATCACTGACTT
TCTTTTATCCTATGAATAACTTATATTCAGAATGCACTGGCTTTCTTTGA
TGCATGCACAACTTATTCAGAATCATTCCCACAAAGACACTTTTTTTTCC
CAAATGCTTATCTAATCCTCTACATTCCTGTAATCTAGTTTAACATGAGA
TCAACAGTCAGTTCCTTCTGCCTGCCGCTATGAGTGAAGCTAATAAAACA
ATTTTAAGTGTGGATACTAAAACTTGGATAGTCCATGAGAAAGGACTAGT
AGAAACAATAGAGCCCTTCAATAATTAAAGAGTATGTTAGCATTGCCTCT
ATGTCTTCTACCAATCAATTATCTATGGATCTTAGTCTTGTGAAGTTGAC
CACCTTATGTTCCCAAGACTAAAATCTGGCATTTGTCGCATTGTCCTTGA
AAAAACTGTAGTGTTTTCCTCCAATACCCTGGTTCTGTGCATGATTTCCC
CAGTATTTGGCCAACCTTTTTTGCCCTTTCTGCCTTGCTTTCTTTTGCAA
CGAGGGTTACAATAGTTCTAACCCCAGGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_b23.g1 MSMg01no052_b23.g1 CHROMAT_FILE:
MSMg01no052_b23.g1 PHD_FILE: MSMg01no052_b23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:38 2005
         (253 letters)



>mm_chr2_133821473_133822127
          Length = 655

 Score =  427 bits (221), Expect = e-124
 Identities = 246/255 (96%), Gaps = 2/255 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcactgactttcttttatcctatgaataacttatattcagaatgcactggctttcttt 60
           |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 455 aatcactgactttcttttatcccatgaacaacttatattcagaatgcactggctttcttt 396

                                                                       
Query: 61  gatgcatgcacaacttattcagaatcattcccacaaagacactttttttt--cccaaatg 118
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 395 gatgcatgcacaacttattcagaatcattcccacaaagacactttttttttgcccaaatg 336

                                                                       
Query: 119 cttatctaatcctctacattcctgtaatctagtttaacatgagatcaacagtcagttcct 178
           ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||
Sbjct: 335 cttatctaatcctctacattcctgtaatctagtttaacacgagatcaacagccagctcct 276

                                                                       
Query: 179 tctgcctgccgctatgagtgaagctaataaaacaattttaagtgtggatactaaaacttg 238
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 tctgcctgcagctatgagtgaagctgataaaacaattttaagtgtggatactaaaacttg 216

                          
Query: 239 gatagtccatgagaa 253
           |||||||||||||||
Sbjct: 215 gatagtccatgagaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 655
Length adjustment: 9
Effective length of query: 244
Effective length of database: 646
Effective search space:   157624
Effective search space used:   157624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)