BAC Information

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BAC

Clone NameMSMg01-052D19
Chromosome2 (Build37)
Map Location 125,495,317 - 125,495,866
singlet/doubletsinglet
Overlap geneShc4
Upstream geneLOC100043367, LOC100043369, Slc24a5, Myef2, LOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152
Downstream geneEid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052D19.T7 (MSMg01no052_d19.b1)MSMg01-052D19.TJ (MSMg01no052_d19.g1)
ACCAG280778AG280779
length698696
length of high quality
(start - end)
541 (63 - 603)231 (74 - 304)
definitionCHROMAT_FILE: MSMg01no052_d19.b1 PHD_FILE: MSMg01no052_d19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:48 2005CHROMAT_FILE: MSMg01no052_d19.g1 PHD_FILE: MSMg01no052_d19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTGCGGCCGCTATAGACTCCTATATTCAGAAATCCGCGGAATTCCGCTA
ATTTACGAACCGGTGTGCTAAGGCTGAGCCACACCACAACTAGATTCAGC
TTTTTTCAGTAAACAGCAATCTCGGTGTTCACAGTGTGATAAAATATCCG
GCAACACAGTGAGGAATCAAGGAATGACACTCTGGAAAGTATTCTCGGAG
AGAACCCCTGTACAATCTGTGACTGGTGAGCACTACACAGGCTCTTGACA
GAGAGGAACTGTGAATTCCCTCCCGTGACTGAGCAGTGTCTTCAAGGTTT
ACACAAATCTGTATGGTCATTATAGACTGGCCTTGTTAGCCTTGGCTGAC
AACTCTGATGGTGAATGGGATTAAATCTGACTGATAATCTGTTTAGTCTG
CTTGTGGGGAACATTCTGCAAGAGAAACGGCAGTGCACACAGGACACACA
GATCTCACGATTTTTATGTTAACTGAAAACGTACCAGAGGATAACTCAGT
GGCTACTAACACCACAGAGGGCTAGCAGTCCTTCTAGTAAGCCTAACCTT
TTAAAATCCTGACAGAGGAAACATTTGCCCAAACCACTGTGGGTGTTTTG
TTTTGTTTTGTTTTCTACCTGATACATGAAGCATTCAACAAATTGTAATA
TCCCACAAGACATGAAGGAGTTAATATTCTGCATATGAAAATTCTTAG
ATGGAGTAGGCTGGAGGCGNCTGGCCTTCCTCACCGGGGGAACNATAGAA
GGTTTCCCATATCAAGGNCAGNCTTGGTTTCAGAGTGAATTCGCACTACT
AGCCTGGACTGCCCGAGGAACATCCTGTCTCAAAATCCCAAGTAAGTGGG
CCAGCTGTGGAGACAGGAACCGTTAATTCTAGCACTCAGGAGTCAGAGGC
AGGTGCATCTCCCAGAGCCCAAGACCAGGCTGGTCTACATCACTAGTTCT
AGGACAGTCAGGACTATGTATCCTGTCTCAAAAAACAAAACAACAAAAAA
CAAGTAAATTTATTCACTTATTTAAAGAAAGAAAAAGTGCCCCTGTGTAC
TATTTTTCTGCCCCCTCTCCTACGAGCCACACCAGGGTTGATTCCTGGGT
CCACTCCATCTCCCCATTCAGTACACAAAGCACCCTGGGAGGCCCAGCTT
ACAGGAGTGATGGTCAGGAAAACTGTGGCGACGGTGGTCAGGGAATCAGG
TGAGGCCCTTTGTATATACTGCACAGCATAAATCCCAGGTGAAAAGTCCT
TATACAGAAGATGCTCAGAAGACAGTATATCTGACGGGCCGGGAAGACTA
TTCTCTGTTACCTGGTAGCTCTAGCCCATGTTTTGTTCGTTTGCTGTTGT
TGACAGTCAGCACGCAGACTATAACTCTGCAGTTTTTTGGTCGCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_d19.b1 MSMg01no052_d19.b1 CHROMAT_FILE:
MSMg01no052_d19.b1 PHD_FILE: MSMg01no052_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:48 2005
         (541 letters)



>mm_chr2_125495126_125496066
          Length = 941

 Score =  891 bits (461), Expect = 0.0
 Identities = 523/563 (92%), Gaps = 35/563 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgtgctaaggctgagccacaccacaactagattcagcttttttcagtaaacagcaatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gtgtgctaaggctgagccacaccacaactagattcagcttttttcagtaaacagcaatct 251

                                                                       
Query: 61  cggtgttcacagtgtgataaaatatccggcaacacagtgaggaatcaaggaatgacactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cggtgttcacagtgtgataaaatatccggcaacacagtgaggaatcaaggaatgacactc 311

                                                                       
Query: 121 tggaaagtattctcggagagaacccctgtacaatctgtgactggtgagcactacacaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 312 tggaaagtattctcggagagaacccctgtacaatctgtgactggtgagcact--acaggc 369

                                                                       
Query: 181 tcttgacagagag---------gaactgtgaattccctcccgtgactgagcagtgtcttc 231
           |||||||||||||           ||        ||| ||||||||||||||||||||||
Sbjct: 370 tcttgacagagagccccccccc--ac--------ccc-cccgtgactgagcagtgtcttc 418

                                                                       
Query: 232 aaggtttacacaaatctgtatggtcattatagactggccttgttagccttggctgacaac 291
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aaggtttacacaaatctggatggtcattatagactggccttgttagccttggctgacaac 478

                                                                       
Query: 292 tctgatggtgaatg-------------ggattaaatctgactgataatctgtttagtctg 338
           ||||||||||||||             |||||||||||||||||||||||| ||||||||
Sbjct: 479 tctgatggtgaatgggattcccatcttggattaaatctgactgataatctgcttagtctg 538

                                                                       
Query: 339 cttgtggggaacattctgcaagagaaacggcagtgcacacaggacacacagatctcacga 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cttgtggggaacattctgcaagagaaacggcagtgcacacaggacacacagatctcacga 598

                                                                       
Query: 399 tttttatgttaactgaaaacgtaccagaggataactcagtggctactaacaccacagagg 458
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 599 tttttatgttaactgaaaacttaccagatgataactcagtggctactaacaccacagagg 658

                                                                       
Query: 459 gctagcagtccttctagtaagcctaaccttttaaaatcctgacagaggaaacatttgccc 518
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 659 gctagcagtccttctagtaagcctgaccttttaaaatcctgacagaggaaacatttgccc 718

                                  
Query: 519 aaaccactgtgggtgttttgttt 541
           |||||||||||||||||||||||
Sbjct: 719 aaaccactgtgggtgttttgttt 741


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)