BAC Information

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BAC

Clone NameMSMg01-052F17
Chromosome2 (Build37)
Map Location 172,959,128 - 172,959,367
singlet/doubletsinglet
Overlap genenone
Upstream geneMc3r, 2010011I20Rik, Aurka, Cstf1, F730031O20Rik, 2410001C21Rik, A330041C17Rik, 1700029J11Rik, LOC629957, Tcfap2c, LOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800
Downstream genePck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052F17.T7 (MSMg01no052_f17.b1)MSMg01-052F17.TJ (MSMg01no052_f17.g1)
ACCAG280866AG280867
length686713
length of high quality
(start - end)
243 (72 - 314)79 (125 - 203)
definitionCHROMAT_FILE: MSMg01no052_f17.b1 PHD_FILE: MSMg01no052_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:57 2005CHROMAT_FILE: MSMg01no052_f17.g1 PHD_FILE: MSMg01no052_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TAATTTGCGGCGCTAAACGACTCCTATATGCCGCAGTNGCGCGGAATTCA
GTCATGTATCTACAAGGATTAAACAGAAGTTTACTTCGTAAAGCTAAAGA
ACATGAATATAGAGAGCCTGGAGTGTGCTTCCCTGAGGCACAGAGTAGCC
CAGTGAGTTATTAGGCAGTAATTAAGCAACAAGTTATTACATTGTGAATT
GCAAAGATTTTAGGAGTATTTCTGAGGTAGTAGCATCTTCTGGGGGTGAA
GTATCGATTATAACTGGCAGATTCCTCCATGTTACTGTCCTTAAGTTTTT
CCTTCGCCAGATTTTTCTTACACTCTTTATTCCACTTGATAATTTGACTC
TTTTCTGGGGAGATACGAACATTTAAATATACCTTCACTCCAGATAGAGG
ATCTAGATAAGTCACAGAAAAGATTCCATTCATGTCCAGCTCACTGAGCC
AATGAGTTAATCAGGGTGACTTATGGAATGTGGGTGAGGGGTGATTTATG
GAATTACTGATACCTCAAAGACACTCGTGTAATTCGCAAGCCTGGAGCTC
TCTGACAGGGGAGCTTTTCTCCACTGCAGACTTTACTCCTTATACCATTC
TGGTAAGGGAGGGGCCTTGCGTGACTCGTAAGTTTCTGGCCTGGCTTGAA
ATTTGTGATTTGTTTACCGAATGCTCCTATTGCCCT
TAATATGTGTAGGCTGGAGGAAGCCTGGTTGCCTCACTTGANTGAANTAT
AGAAGGTTTCCAAAAAAAGGGTTGCTAAGGTAACAGACTCTCACAGAGTT
TGTTGATAGAATATCACCACACGGATTGCTGGAAGAAGACTGTAGCCATA
GCAATCTCTATTGGCCCCATGGGGGTGGGGGGTGGTTTTAAAATATTTTT
CCATAATGGCTAATCTGTTAGTGGCCAGCATTCATATAATACCCCCTACC
TTTTATTAAAATCACATTCACACACCTATCTTGTAGGAATTTTTATGCAA
AGGAAAACAAACCTCTTATTTTTTTCTTACCCACCACACGTTTCTGTAAA
TATCCTCCATCTTTTTATTCCCCCCCCCACCCCCCCAATTATATTTATAG
AATTGAACAGTCCTGAAGCCACCCCAAAATAAAATATATTTGCCCTGATA
TATTTACTATTATACATTCTTGCCTGACTGTTGTCTGTTCCTTCTTAATC
CCAATTTTTTGCTTAAGAAACAAATCTTGTATTCTGTTATACCATAACCC
CCTACGATTCTCCTTGACATGACCTTGGCTTAAATAACTATCTTAACCCT
TATTATATATTGTCCCTATCCCCATTATCTACCCCACCGTCTTTTCCCTC
CAGAATAGGAGTTTATTATCCTACCCTCCCCTCTATCTACCCCTAACTTA
TTATTTTTCCCGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_f17.b1 MSMg01no052_f17.b1 CHROMAT_FILE:
MSMg01no052_f17.b1 PHD_FILE: MSMg01no052_f17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:57 2005
         (243 letters)



>mm_chr2_172958928_172959570
          Length = 643

 Score =  441 bits (228), Expect = e-128
 Identities = 237/240 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacagaagtttacttcgtaaagctaaagaacatgaatatagagagcctggagtgtgcttc 60
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 201 aacagaagtttacttcgtaaagctaaagaacatgaatatagagagattggagtgtgcttc 260

                                                                       
Query: 61  cctgaggcacagagtagcccagtgagttattaggcagtaattaagcaacaagttattaca 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 cctgaggcacagagtagcccagtgagttattaagcagtaattaagcaacaagttattaca 320

                                                                       
Query: 121 ttgtgaattgcaaagattttaggagtatttctgaggtagtagcatcttctgggggtgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtgaattgcaaagattttaggagtatttctgaggtagtagcatcttctgggggtgaag 380

                                                                       
Query: 181 tatcgattataactggcagattcctccatgttactgtccttaagtttttccttcgccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatcgattataactggcagattcctccatgttactgtccttaagtttttccttcgccaga 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)