BAC Information

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BAC

Clone NameMSMg01-052N22
Chromosome2 (Build37)
Map Location 112,107,089 - 112,107,725
singlet/doubletsinglet
Overlap geneSlc12a6
Upstream geneOlfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3
Downstream geneTmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052N22.T7 (MSMg01no052_n22.b1)MSMg01-052N22.TJ (MSMg01no052_n22.g1)
ACCAG281242AG281243
length703703
length of high quality
(start - end)
638 (41 - 678)567 (68 - 634)
definitionCHROMAT_FILE: MSMg01no052_n22.b1 PHD_FILE: MSMg01no052_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:37 2005CHROMAT_FILE: MSMg01no052_n22.g1 PHD_FILE: MSMg01no052_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCAG
TTACTTTTACACTCTATAAAAACATAAATTTCAAAAAATAATTTTATGAC
ACCCAACTGAATCTGCAAAAGAATCCAGTAAGACACAAGATGTAACAACC
TGCCTTAAACGCTGACTTAGGAGTCAAAGCCCCAAAGCTCTCTAGAAAGC
GCATATCCAGCCCATTAAAATTTTAGTTTAGAACTTTTTTTGTGTGTTGT
AAACGATTTAATTTTTTAAAAATAGTCATTTTAATTAGAAATAAGGCAGA
AATAAGGAAACCAAAATAGACATTTCCTTGCCCTCTTGCCAGCTACTTTC
CCACGCCAAAAAGACTACTGCAGTGACCTACTAACTGTCGTTATTATTCC
CACACTCGTAGGCATCACAGAAACGTGGGCCTTAATTTATGATTATAAAA
CTAGGGTAGTTAGCCAACATGGACAACCCAAGGGTTGAAACACCCGGCTC
TCTGAGTCTCTACTTACCCTCCGTAACATCCTGGGGATTAGAAGTCCGGT
CACTGGAAGGATCTAGGGCAACAGTTGCCAGAGAAGTAGTAGCCCCAGAC
AGTTCGCTCATAGGCTCACTACGGCTTGTTTCTGGCACACTTTCTCGGGA
GCTAAATCTTACTCGAGAACTAGACCGAGAGCTGAAGTCCGGGCTGGTGT
CTG
ACGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTTCCTAATGAGAAAAGTCGCATTGAATGAGG
TAACCCAGACCCAAGAAGACAAACCTTAAGCATGCTCTCTCATTGGAGGC
TCCTGGCTCTGAACCTTCAGATGTGAATACATATCCTGGAGTAACTACGG
AAACCAGAAAAGTAAAAAGGGACCATTGCCAAGGTTAGAGTTTGTGAAAG
CATCAGGGAGGAGAATAGCAAGGCACAAATGATCTGACTGGGGAAACTTG
GGAAATGGGAAGGAGGCTCTAATTAAGGAGGGGGAGAGAGAAATACAGAA
GAAAGAGGAAGGAAGATAAAATAAGATCAATAACATTGTAAGGAATCATA
TTATTAACTATCTCCCACAAAATGCCTATAGTAGACATAAATCTCTGTAT
ACGTGTATAGCTTAAATGAAATTTTTCCATCAGCACTAACAATCCTCCTT
TGAAGAGCCAAAGAACATCAAATAAAAATTCCAACACCAGGCATGAGAAA
CCCTCTTTTGAGTTATCAGTCAGGGTAGTCTGAGAGACTCTCAAATATTA
CAGGCTACTGCTATTAATCTTGGTTTACCACACAGATGTAGAAATAAGTC
TCTATTGCTGGAGGCACCTTCCACTTCAGGTACTGGACCCAGAGGCCGCT
GAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_n22.b1 MSMg01no052_n22.b1 CHROMAT_FILE:
MSMg01no052_n22.b1 PHD_FILE: MSMg01no052_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:37 2005
         (638 letters)



>mm_chr2_112106887_112107925
          Length = 1039

 Score = 1170 bits (605), Expect = 0.0
 Identities = 629/639 (98%), Gaps = 5/639 (0%)
 Strand = Plus / Minus

                                                                       
Query: 3   gaattcagttacttt---tacactctataaaaacataaatttcaaaaaataattttatga 59
           |||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||
Sbjct: 839 gaattcagttactttaaat--actctataaaaacataaatttcaaaaaataattttatga 782

                                                                       
Query: 60  cacccaactgaatctgcaaaagaatccagtaagacacaagatgtaacaacctgccttaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cacccaactgaatctgcaaaagaatccagtaagacacaagatgtaacaacctgccttaaa 722

                                                                       
Query: 120 cgctgacttaggagtcaaagccccaaagctctctagaaagcgcatatccagcccattaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cgctgacttaggagtcaaagccccaaagctctctagaaagcgcatatccagcccattaaa 662

                                                                       
Query: 180 attttagtttagaactttttttgtgtgttgtaaacgatttaattttttaaaaatagtcat 239
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 661 attttagtttagaactttttttgtgtgttgtaaaagatttaattttttaaaaatagtcat 602

                                                                       
Query: 240 tttaattagaaataaggcagaaataaggaaaccaaaatagacatttccttgccctcttgc 299
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tttaattagaaataagacagaaataaggaaaccaaaatagacatttccttgccctcttgc 542

                                                                       
Query: 300 cagctactttcccacgccaaaaagactactgcagtgacctactaactgtcgttattattc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 541 cagctactttcccacgccaaaaagactactgcagtgacctactaactgtcgctattattc 482

                                                                       
Query: 360 ccacactcgtaggcatcacagaaacgtgggccttaatttatgattataaaactagggtag 419
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 ccacactcgtaagcatcacagaaacgtgggccttaatttatgattataaaattagggtag 422

                                                                       
Query: 420 ttagccaacatggacaacccaagggttgaaacacccggctctctgagtctctacttaccc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ttagccaacatggacaacccaagggttgaaacacccggctctctgagtctctacttaccc 362

                                                                       
Query: 480 tccgtaacatcctggggattagaagtccggtcactggaaggatctagggcaacagttgcc 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tccgtaacatcctggggattagaagtccggtcactggaaggatctagggcaacagttgcc 302

                                                                       
Query: 540 agagaagtagtagccccagacagttcgctcataggctcactacggcttgtttctggcaca 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agagaagtagtagccccagacagttcgctcataggctcactacggcttgtttctggcaca 242

                                                  
Query: 600 ctttctcgggagctaaatcttactcgagaactagaccga 638
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttctcgggagctaaatcttactcgagaactagaccga 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1039
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1029
Effective search space:   646212
Effective search space used:   646212
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)