BAC Information

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BAC

Clone NameMSMg01-054D04
Chromosome2 (Build37)
Map Location 116,739,744 - 116,740,244
singlet/doubletsinglet
Overlap genenone
Upstream geneMrg1, G630016G05Rik, 2810405F15Rik, LOC433464, Tmco5
Downstream geneLOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054D04.T7 (MSMg01no054_d04.b1)MSMg01-054D04.TJ (MSMg01no054_d04.g1)
ACCAG282201AG282202
length751650
length of high quality
(start - end)
506 (108 - 613)34 (231 - 264)
definitionCHROMAT_FILE: MSMg01no054_d04.b1 PHD_FILE: MSMg01no054_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:20 2005CHROMAT_FILE: MSMg01no054_d04.g1 PHD_FILE: MSMg01no054_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NACCCNNNCCCCCCCNCTCATTTATTTATTTTTCCTCCACAACCAAACCT
CCCCACGCCGGTGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCC
AAGAGGATCCGCGGAATTCCATGTTTCCACAGTGTTTCACTGGATTACAC
TGCGTGAGATTGTAAGCCGTCTGTCGGCAGGCAACCACGATGTGTGTCCT
CCGGTGTTGTATTGCAGGTCTTGTAAACATGATAACAAGCTCTAGCGGTC
ACTTCATTGCCACCGGGGTTTAAGAGCTGAAGTCTGATGCAGAGAGATGA
ACAGCTTTGCGTTTGACTCGCTCTTCTCCCGCCCGGCCCTGTCCTGGCTC
ATCTTCCTCCCACTGGTCCTTTTATATACCCAAGCTCGTCTGACTCATCA
GCCCCTCTTCCCTCCCTGGCTCCTACAGAAGCTGCTAAAATTAGGTTCTG
TTGAATTATGACAAGATTTCTCTCGAGTCACAAGCTCCAGGCTTGGTTCC
ATTGAGCACCGGGTCATAGTTAAGTCTCCATTCCGGAAGGGGTTTTGAGC
TTCCTTTTTGTGCACCGAGGAAGCTTCTTGTGGTTCATTCTGTGATTTTT
TTTTTCAACTTAAAAAGTTAAACATTTTTTAGAGATGTATTTATTTTTAT
TTTATGTGCGTGGATGTTTTCCTCCCAGGTACGTCTGGGCACCACATGCA
TGCCGTGTACCCATCGGATTTTGAAGGACCTCCTGGAATTGGAATCCGGG
A
AACATGAAGGAGAAGGCCGGGGCGCCTGATCCGACGGGAGGNGAACATAG
AATTACACAGAATCCGAAAAATGTCTGAAATTGCATTCCAGCCTGGTTAC
CTAGTGATATACAGGAATCTGTCTTTATTAATATATTTCCTGAAACAAAT
CTACTGTCATAGATTTTCGTATATTAAAAGCAGTAAAATAAACAAAAGAC
ATCTCTTGAGAATCATATTTACTGGAATAATAGATTATTCACAGCATAGT
GATCAGAACGGCCTGACAGAACTGGATTTATATTTCGAAGTAAATTTTAC
AAGAGATGCCAATATCTAGCACTTCACTAGTAAAATACTAAGAAAATAGG
CCTGTCTGTTTAAAGGTAAGGTCCTTGCACGAGNGCTGTTGGGAGCAAAT
GACGCACTTTAGCCAAATTAGTGAATAAAAATGATAAATAAATAAATAAA
TAGCCTTGGCGAGCTTTGCTTTGAAAGCCTAGGTCCAACCATTGAATCTT
TAAAAGATATGAGCTATGGTCTGCCTATTTCTGGATATTTTAAGCAAAAA
CCAAAATAATAACAACAACCCCCACAGCTTTTCAGTGCCCTACCAGGACA
GCCTCACTCATTTTTCTATGCATTACTTGCAAGTGTGTGGCCCCGATGCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_d04.b1 MSMg01no054_d04.b1 CHROMAT_FILE:
MSMg01no054_d04.b1 PHD_FILE: MSMg01no054_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:20 2005
         (506 letters)



>mm_chr2_116739523_116740428
          Length = 906

 Score =  878 bits (454), Expect = 0.0
 Identities = 489/504 (97%), Gaps = 7/504 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattccatgtt----tccacagtgtttcactggattacactgcgtgagattgtaagccg 62
           ||||||||||||       |||||| |||||||||||||||||||||||||||| |||||
Sbjct: 722 gaattccatgttaaag---acagtgcttcactggattacactgcgtgagattgtgagccg 666

                                                                       
Query: 63  tctgtcggcaggcaaccacgatgtgtgtcctccggtgttgtattgcaggtcttgtaaaca 122
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 665 tctgtcggcaggcaaccacgatgtgtgtcctccggtgttgtattgcaggtcttgtataca 606

                                                                       
Query: 123 tgataacaagctctagcggtcacttcattgccaccggggtttaagagctgaagtctgatg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tgataacaagctctagcggtcacttcattgccaccggggtttaagagctgaagtctgatg 546

                                                                       
Query: 183 cagagagatgaacagctttgcgtttgactcgctcttctcccgcccggccctgtcctggct 242
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 545 cagagagatgaacagctttgcgtttgattcgctcttctcccgcccggccctgtcctggct 486

                                                                       
Query: 243 catcttcctcccactggtccttttatatacccaagctcgtctgactcatcagcccctctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 catcttcctcccactggtccttttatatacccaagctcgtctgactcatcagcccctctt 426

                                                                       
Query: 303 ccctccctggctcctacagaagctgctaaaattaggttctgttgaattatgacaagattt 362
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ccctccctgcctcctacagaagctgctaaaattaggttctgttgaattatgacaagattt 366

                                                                       
Query: 363 ctctcgagtcacaagctccaggcttggttccattgagcaccgggtcatagttaagtctcc 422
           ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 365 ctctcgagtcacaagctccaggcttggttccattgagcaccggctcagagttaagtctcc 306

                                                                       
Query: 423 attccggaaggggttttgagcttcctttttgtgcaccgaggaagcttcttgtggttcatt 482
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 attccggaagggcttttgagcttcctttttgtgcaccgaggaagcttcttgtggttcatt 246

                                   
Query: 483 ctgtgattttttttttcaacttaa 506
           ||||||||||||||||||||||||
Sbjct: 245 ctgtgattttttttttcaacttaa 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)