BAC Information

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BAC

Clone NameMSMg01-054K04
Chromosome2 (Build37)
Map Location 69,305,299 - 69,305,543
singlet/doubletsinglet
Overlap geneLrp2
Upstream geneStk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11, Dhrs9
Downstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054K04.T7 (MSMg01no054_k04.b1)MSMg01-054K04.TJ (MSMg01no054_k04.g1)
ACCAG282517AG282518
length774701
length of high quality
(start - end)
264 (104 - 367)440 (79 - 518)
definitionCHROMAT_FILE: MSMg01no054_k04.b1 PHD_FILE: MSMg01no054_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:52 2005CHROMAT_FILE: MSMg01no054_k04.g1 PHD_FILE: MSMg01no054_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:55:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNTTTTCCCCNNNTTCTTCTTTCTTCTNNNNNCCCNNCAAAC
NNNNNTTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCTCTATTTCCGGGAGGAAAAAGATTGAGCTGGGGAGGA
AGTTGAAAATTTACTGACTTTTGAATGATCAATGTGGCCTCTTTGAAGAT
CCCAGTGGCCTCTCCCGTTATGATTTGCTAAGAACTGGCACCGTATGGTA
GGGGTGTTGATTTTGAGTGTAATTATGGGCCTATGGCTGATATTTTAGGT
TCTCTAGTAACTGTCTTTTGCCTGCAGGCATTAATGAGTGCCAGGATTCT
TCAATCAGTCATTGTGACCACAACTGTTTTGATACCATAACCAGTTTCTA
CTGTTCCTGTCTTCCTGGGTACATACTCATGTCTGACTAACGTACTTGCG
TGGATATTGACGAGTGCCACCCCCCTCCCCAGCTCTGTAGCCTGAAGTGT
GAGAATGTCATAGGCTCCTATATTTGTAAGTGTGCCCCTGGTTACTTCCG
TGAGCCTTATGGTATGATCTGCCGCTTGAATAGCGATATTGTATTCTACT
TCATTCTTTGCCAACCGTTTATGATATAACAAATTTTACTATTGCATGGG
AACGTTATTTTACATCGGATTTTGTTATGTGATTGGTGTATATGACTGGG
GTTCCTTGCCACCCCGCAATATCCTACTAGTGAAATAGTTTGGTATTTGG
GTATTCTATAGAAACAGGACAATA
TTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACCAGAGACACTGA
AACTTATAGAGGAGAATGTAGGGAAAAGCCTTGAAGATATGGGTACAGGG
GAAAAATTTCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAAT
CGACAAATGGGACCTCATAAAATTGCAAAGCTTCTGCAAGGCAAAAGACA
CTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACC
TATTCTAAATCAGATAGGGGACGAATATCCAGTATATATAAAGAACTCAA
GAAGTGGACTCCAGAAAATCAAATAGCCCCATTAAAAAATGGGGCTCAGA
GCTAAACAAAGAATTCTCACCTGACGAATACCGAATGGCTGAGAATCACT
TGAAACAATGTTCAACATCCTTAATCATCAGGGAAATTCAAATCTAAACA
ACCCTGAGATTCAACCTCACACCAGTCAGAATGGCTAATATCAAAAATTC
AGGTGACAGCAGATGCTGGTGAGGATATGGACAAAGAGGAACACTCCTCC
ACTGTTGGTGGGATTGCAAGCTTTTACCACCACTTCTGGGAATCAGTCTG
TTGGTTCCTCAGAATCTTGTACATTACACCACCGTAAGGTTCCGCAATAT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_k04.b1 MSMg01no054_k04.b1 CHROMAT_FILE:
MSMg01no054_k04.b1 PHD_FILE: MSMg01no054_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:52 2005
         (264 letters)



>mm_chr2_69305080_69305743
          Length = 664

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Minus

                                                                       
Query: 20  gggaggaaaaagattgagctggggaggaagttgaaaatttactgacttttgaatgatcaa 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gggaggaaaaagattgagctggggaggaagttgaaaatttactgacttttgaatgatcaa 405

                                                                       
Query: 80  tgtggcctctttgaagatcccagtggcctctcccgttatgatttgctaagaactggcacc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtggcctctttgaagatcccagtggcctctcccgttatgatttgctaagaactggcacc 345

                                                                       
Query: 140 gtatggtaggggtgttgattttgagtgtaattatgggcctatggctgatattttaggttc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 gtatggtaggggtgttgattttgagtgtaattatgggcctatggctgatattttaggttc 285

                                                                       
Query: 200 tctagtaactgtcttttgcctgcaggcattaatgagtgccaggattcttcaatcagtcat 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tctagtaactgtcttttgcctgcaggcattaatgagtgccaggattcttcaatcagtcat 225

                
Query: 260 tgtga 264
           |||||
Sbjct: 224 tgtga 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space:   167025
Effective search space used:   167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)