BAC Information

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BAC

Clone NameMSMg01-054M02
Chromosome2 (Build37)
Map Location 148,592,815 - 148,720,096
singlet/doubletdoublet
Overlap geneCst11, 8030411F24Rik, Cst12, Cst8, Cst13, Cst9, 9230104L09Rik, Cst3
Upstream geneLOC100043820, Foxa2, LOC383752, Sstr4, Thbd, Cd93, Nxt1, Gzf1, Napb, Cstl1
Downstream geneOTTMUSG00000015744, Gm1330, EG668921, LOC433483, LOC383754, LOC100043593, LOC241715, Cst10, EG667048, C530025M09Rik, OTTMUSG00000015750
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054M02.T7 (MSMg01no054_m02.b1)MSMg01-054M02.TJ (MSMg01no054_m02.g1)
ACCAG282603AG282604
length646712
length of high quality
(start - end)
346 (13 - 358)526 (76 - 601)
definitionCHROMAT_FILE: MSMg01no054_m02.b1 PHD_FILE: MSMg01no054_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:01 2005CHROMAT_FILE: MSMg01no054_m02.g1 PHD_FILE: MSMg01no054_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,592,815 - 148,593,030)(148,719,569 - 148,720,096)
sequence
GTTTCTGAATAGCCTGACATGGGTCCTGTGAACAGAACCCATGTTCTCTG
CAAGAGGGAAGCCCTCTTAACCTCTGAGCCGTTTCTCCAGTCCCAGTTTG
AGATATTTTAAACAATACAAGCATGTCTGACAAGTTATTTAAAGTATGCC
TCCAAGTAATTTAATTAAGTAAGTAAGTAAGTATACATTCATGTTTTATT
GAAAATACTGGTGAACATCTTCAAACTTTTTTTTTTTCCATTTTTTATTA
GGTATTTAACTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATAT
CCACCCACCCCCACTCCCCTGCCCACCCATTCCCCCTTTTTGGCCCTGGT
GTTCCCCCGCACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCT
TTCCAGTGATGGCCGACTAGGCCATCTTTTGATATATATGTAGCTAGAGT
CAAGAGCTCCGGGGTACTGGTTAGCTCATAATGTTGTTCCACCTATAGGG
TTGCAGATCCCTTTAGCTCCTTGGCCACTTTCTCTAGCTCCTCCATTGGT
AGCCCTATGATCCATCTATGATCTGACTGCGAGCATCCACTTCTGGGTTC
GCTGTGCCCCGGATTATTCTCATAAGAACACAGCTATTTTTGCTTT
GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGAGAAATAAAAACACAAAAAGAGG
TACTGTTGCCACATTTAGAGTTTACAGAAGGGAGGCTGAGAAGCGCTCAA
AGTTCCATTTCAGTCTCACAGTTTGCAATTAACAAACAACATGAGGTAAA
AATAAAACTGTAAACGAGAAACTCTCTATCTAGCCACACCTACACCTCTT
ACTAGGCTCCCAATTTTCATCATTTAAACTCTAATAATGCCATAAAGATG
TTGGGTACATAACTATATAGAACACCCAGACTCCTCACAGTTCTGATCCT
TCAAGGCCAAATCCAGTTGTAACCTTCTCCTCCCTTGTATTGCTGTAGTT
CTGTGATCCTAACTGCCCCAAGGCTTCCCTGCACCTGGGTCCAATTAAAA
AGCACCAGGGTACATGATGCCCCTACCCATCTAGTTCCTAACAGATATAA
ATCTCAAACCTTCACTCAGATAAAGCAAATTTGTGTTGGGATTTTATTTT
CAGCTATGTGATAATAATGACAATATCAACAGAGCTTTCCAAGTTTCCAC
GTGAGTTCAGGTGTGGAGACAGATTCCAAGGAACTGTGGTAGACAGGATA
TATGGAAGAGGCCAAGTAAAAATGTCATACCTCTCTAGTAGAGGCTCAGG
CTAACTGAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_m02.b1 MSMg01no054_m02.b1 CHROMAT_FILE:
MSMg01no054_m02.b1 PHD_FILE: MSMg01no054_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:01 2005
         (346 letters)



>mm_chr2_148592615_148593360
          Length = 746

 Score =  379 bits (196), Expect = e-109
 Identities = 211/216 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgacatgggtcctgtgaacagaacccatgttctctgcaagagggaagccctcttaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctgacatgggtcctgtgaacagaacccatgttctctgcaagagggaagccctcttaacc 260

                                                                       
Query: 61  tctgagccgtttctccagtcccagtttgagatattttaaacaatacaagcatgtctgaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgagccgtttctccagtcccagtttgagatattttaaacaatacaagcatgtctgaca 320

                                                                       
Query: 121 agttatttaaagtatgcctccaagtaatttaattaagtaagtaagtaagtatacattcat 180
           ||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 321 agttatttaaagtctgcctccaagtaatttaattaattaagtaagtaagtatatattcat 380

                                               
Query: 181 gttttattgaaaatactggtgaacatcttcaaactt 216
           |||||||  |||||||||||||||||||||||||||
Sbjct: 381 gttttatccaaaatactggtgaacatcttcaaactt 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no054_m02.g1 MSMg01no054_m02.g1 CHROMAT_FILE:
MSMg01no054_m02.g1 PHD_FILE: MSMg01no054_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:01 2005
         (526 letters)



>mm_chr2_148719369_148720296
          Length = 928

 Score =  986 bits (510), Expect = 0.0
 Identities = 523/528 (99%), Gaps = 2/528 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagaaataaaaacacaaaaagaggtactgttgccacatttagagtttacagaagggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agagaaataaaaacacaaaaagaggtactgttgccacatttagagtttacagaagggagg 669

                                                                       
Query: 61  ctgagaagcgctcaaagttccatttcagtctcacagtttgcaattaacaaacaacatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ctgagaagcgctcaaagttccatttcagtctcacagtttgcaattaacaaacaacatgag 609

                                                                       
Query: 121 gtaaaaataaaactgtaaacgagaaa--ctctctatctagccacacctacacctcttact 178
           ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 608 gtaaaaataaaactgtaaacgagaaactctctctatctagccacacctacacctcttact 549

                                                                       
Query: 179 aggctcccaattttcatcatttaaactctaataatgccataaagatgttgggtacataac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 aggctcccaattttcatcatttaaactctaataatgccataaagatgttgggtacataac 489

                                                                       
Query: 239 tatatagaacacccagactcctcacagttctgatccttcaaggccaaatccagttgtaac 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tatatagaacacccagactcctcacagttctgatccttcaaggccaaatccagttgtaac 429

                                                                       
Query: 299 cttctcctcccttgtattgctgtagttctgtgatcctaactgccccaaggcttccctgca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 428 cttctcctcccttgtattgctgtagttctgtgatcctaactgccccaagtcttccctgca 369

                                                                       
Query: 359 cctgggtccaattaaaaagcaccagggtacatgatgcccctacccatctagttcctaaca 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctgggtccaattaaaaagcaccagggtacatgatgcccctacccatctagttcctaaca 309

                                                                       
Query: 419 gatataaatctcaaaccttcactcagataaagcaaatttgtgttgggattttattttcag 478
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 308 gatataaatctcaaaccttcactcaaataaagcaaatttgtgttgggatttttttttcag 249

                                                           
Query: 479 ctatgtgataataatgacaatatcaacagagctttccaagtttccacg 526
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ctatgtgataataatgacaatatcaacagagctttccaagtttccacg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space:   473688
Effective search space used:   473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)