BAC Information

Click to search

BAC

Clone NameMSMg01-055I18
Chromosome2 (Build37)
Map Location 108,592,879 - 108,593,113
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003
Downstream geneLOC100043423, LOC623031, Mett5d1, Kif18a, Bdnf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055I18.T7 (MSMg01no055_i18.b1)MSMg01-055I18.TJ (MSMg01no055_i18.g1)
ACCAG283189AG283190
length704698
length of high quality
(start - end)
568 (44 - 611)236 (69 - 304)
definitionCHROMAT_FILE: MSMg01no055_i18.b1 PHD_FILE: MSMg01no055_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:58 2005CHROMAT_FILE: MSMg01no055_i18.g1 PHD_FILE: MSMg01no055_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCACCTGACGAATACCGAATGGCTGAGAAGCACCTGAAAAAATGTTC
AGCATCTTTAATCATCACGGAAATGCAAATCAAAACAACCCTGAGATTCC
ATCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAAGCTTTTACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAA
AATTGGACATAGTACTACCAGCGGATCCCGCAATACCTCTCCTGGGCATA
TATCCAGAAGATGTTCCAACTGGTAAGAAGGACATATGCTTCACTATGTT
CATAGCAGCCTTATTTATAATATCGAGAAGCTGGAAAGAACCCAGATGTC
CCTCAACAGAGAACTGGATACAGAAAATGTGGTACATTTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATG
GATGAACCTGGAGGGCATCATCCTGAATGAAATAACCCAATCACAAAAGA
ACTCACATGAACTGTACTCACTGATAAGTGGCTATTAGCCCAGAAACTTA
CAATACCCAAGATACAATTTGCAAAACACATGAAACTCAAGATGAACAAA
GACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTACGAA
AAATTCCATCTGCAGACAAAAGGAGGTTTGACAGGTAATTATACCACCAG
GAGTTTAAGAAGCTCTCCACAGACCCTGGAAATGGGGTCTATATCTGAGT
ATGATAAGTGGTGTGGAGAAAAGGAAGTCTGAAGAACAACAGACAGGGGG
AATAAAGAGACTGGAAGAGACATTCCCTTAAGCCTGTGAGCCAAGCACAG
GCATCAGTGGTGAAGAGCAACTGGCTAGTGATATAATTATGTAAGAATAA
TTGTATTCGTTAGGTTGGGGTGGGTGTAGGATTCTGATGGGGAATCCAAA
GCACACACTGAACATACTAAAGAGAATCCGATTGACATAATACATAGCTA
AGAAACACAACTAATTCTTCCAACTTAAAACTACTAACTCCTTCTTTTCC
AGGTAACATTAAAATCTTGAGTTATCTCCATTGTACAACTATTATATATC
ATATATATGGTCACGATAATATGTGGTTTGTAGTCTGATGCAATGCTCCA
TAACAAGCTGGTAAGTATACATATGTTCAAGTGTGTGTGTGTCTGTGTGC
GTGCGAGCGTGCGTGTGTGTGAGTGTAAGCGCTTCTGCGTTTCTTTTCGA
TACTGCGTCCTTCTGACTTTATGATTTCCCGTTTTACCTCTCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_i18.g1 MSMg01no055_i18.g1 CHROMAT_FILE:
MSMg01no055_i18.g1 PHD_FILE: MSMg01no055_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:58 2005
         (236 letters)



>mm_chr2_108592679_108593314
          Length = 636

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaggaggtttgacaggtaattataccaccaggagtttaagaagctctccacagaccctg 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 201 aaaggaggtttgacaggtaattataccaccaggagtttaagaagctttccaaagaccctg 260

                                                                       
Query: 61  gaaatggggtctatatctgagtatgataagtggtgtggagaaaaggaagtctgaagaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaatggggtctatatctgagtatgataagtggtgtggagaaaaggaagtctgaagaaca 320

                                                                       
Query: 121 acagacagggggaataaagagactggaagagacattcccttaagcctgtgagccaagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagacagggggaataaagagactggaagagacattcccttaagcctgtgagccaagcac 380

                                                                  
Query: 181 aggcatcagtggtgaagagcaactggctagtgatataattatgtaagaataattg 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggcatcagtggtgaagagcaactggctagtgatataattatgtaagaataattg 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)