BAC Information

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BAC

Clone NameMSMg01-055K05
Chromosome2 (Build37)
Map Location 21,624,449 - 21,624,704
singlet/doubletsinglet
Overlap geneGpr158
Upstream geneEtl4, Arhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055K05.T7 (MSMg01no055_k05.b1)MSMg01-055K05.TJ (MSMg01no055_k05.g1)
ACCAG283257AG283258
length759721
length of high quality
(start - end)
228 (66 - 293)256 (77 - 332)
definitionCHROMAT_FILE: MSMg01no055_k05.b1 PHD_FILE: MSMg01no055_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:05 2005CHROMAT_FILE: MSMg01no055_k05.g1 PHD_FILE: MSMg01no055_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTCTGACTCCTGGAGATTCCCTATAGATACTTAAAAGAACAGCCAAGT
TACACTCATATGCAAGAATTCACTAAGGCCTAGGAAATAGGGGGGTTGTG
GTATTGCATTATTCATGAGGCCTGCTACAGCACAACCCCCTGGTATAGGT
TTCTTCACTAGGCCCAAAGGAACAGCATAATCAGAACCCTGGTGGTGGTT
TTAACAATAGACTAGCATTACACCTGGTTCCATTTTAAGTGGTAAACGAC
CTGGTCCCCCGCCATTTTTTGATGTATGCATTCCTTTTGTCTTGTGTCAC
TGTAATTTTTCTCATGCCTCCTCCCGCCTTTCTTGCTATTCTTCCGTATA
TAATAGTCTGGTTTTCATTTGGAAATTAAATTCATATTCGTTCCCGTCTC
CTCGTGTCTGTTGTCTGTTTGTCATTATTTTTCCCTCTGATTTCTCTTGT
TCTTCCGTCTTTAAATAACGATTTCCCTTTTTACTTTACTTCAGTTTACT
TTGACTTCCGTTTCTCCCAACACCTTCTCTGCTTGTCCGATTTTTTTTCC
CCTCTTTCCAAATTTTTTCTTCTTTCTTTCTCTTAAATTATCTTTATTCC
TTTGTACCCGCTATTTTATTTTTACATCGCGTTTTTATAACTCTTTATTT
TTTTCCACTCTCTCTCCCATTTCTTTCTCCCCTTATCTTTCTCTTTCTCC
TCCCCTCCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGGTGACAGTTGTTAGATATTTGC
TATTATCTTAAAAACTGACCATACAAAGTTTCAGCAATAAAGGGGACTCA
TTTAGAAAGGGCCCATCCATCAGACGCTTTAGTCACATCCTATGTAATAC
AATATTAGTCTATTTAATTCTTCCTTATTAAGCATGCAAACCAATTGCCC
TTAGTAATCATATGCGCAAAAGAATCTTAGAATGCTGAAATCTATCTACT
TATTTATATAAACTACAAATTTTATATATTATGTGTATATAAATTCTATA
TAAATTTACCTAACTTATAAATACTTGAACACTTTTGTTAGTCAATGAAA
TTTTGGAGTTACCCTTTTCCCTGTTCGCTATAACATAAATACGCGATGAC
TCTACCTTTTTAGCACACTATAATGTCTATGCGTGGTCACCCTGTCACAT
AGTTACTACCTCCTCCCGCTTAGTTCCCAGACACCGCCATATGAAGAATT
CTTTCTCTATTTCCCGCAACTGCATTCTGAAGATTGTCGCCATTTCGCTC
TTCCACTTATACTGATGACATTGCTTTCTCTGGTTGATTTTTATCACTAT
TATACTGACATTGAACTTCCTGAGCTTGCCTATACCTCGACCCCACCCTC
ATTTCATCTTCTTTTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_k05.g1 MSMg01no055_k05.g1 CHROMAT_FILE:
MSMg01no055_k05.g1 PHD_FILE: MSMg01no055_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:05 2005
         (256 letters)



>mm_chr2_21624249_21624904
          Length = 656

 Score =  441 bits (228), Expect = e-128
 Identities = 249/256 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggtgacagttgttagatatttgctattatcttaaaaactgaccatacaaagtttcagca 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 456 tggtgacagttgttagatatttgctattatcttaaaaactgactatacaaagtttcagca 397

                                                                       
Query: 61  ataaaggggactcatttagaaagggcccatccatcagacgctttagtcacatcctatgta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 396 ataaaggggactcatttagaaagggcccatcgatcagacgctttagtcacatcctatgta 337

                                                                       
Query: 121 atacaatattagtctatttaattcttccttattaagcatgcaaaccaattgcccttagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 atacaatattagtctatttaattcttccttattaagcatgcaaaccaattgcccttagta 277

                                                                       
Query: 181 atcatatgcgcaaaagaatcttagaatgctgaaatctatctacttatttatataaactac 240
           ||| ||||  |||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 276 atcctatgtacaaaagaatcttagaatgctgaaatctatctacttatttatataaattat 217

                           
Query: 241 aaattttatatattat 256
           ||||||||||||||||
Sbjct: 216 aaattttatatattat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)