BAC Information

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BAC

Clone NameMSMg01-055P06
Chromosome2 (Build37)
Map Location 87,626,217 - 87,745,439
singlet/doubletdoublet
Overlap geneOlfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154
Upstream geneOlfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152
Downstream geneOlfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055P06.T7 (MSMg01no055_p06.b1)MSMg01-055P06.TJ (MSMg01no055_p06.g1)
ACCAG283481AG283482
length711706
length of high quality
(start - end)
272 (40 - 311)155 (58 - 212)
definitionCHROMAT_FILE: MSMg01no055_p06.b1 PHD_FILE: MSMg01no055_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:29 2005CHROMAT_FILE: MSMg01no055_p06.g1 PHD_FILE: MSMg01no055_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:29 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(87,745,193 - 87,745,439)(87,626,217 - 87,626,371)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCCTTCTTGCCCCTGTTTAATTGCTCACTTGTTTTCTCATGGGAATTT
GGATACTACTGCTTGGGTTCCTAGAAGCTCATGTGAGATTAAAGTCCTAA
GAGCAAACCATAAAATGTACTGCCTTTCCTGGGAACCCAACCTTTTTAAG
GAAGGTGTACTTTCCTTGAAGAACACAAAGGGTATGTAAAAAATGGAAAA
TGAGAAATGCTATAATGGATTTATAATTTTCGTTTAAGTGTTACACAAGT
TTTCCATTCAAAAATATAGTGTGACTCACAACAGTGAAGAAGGAGGTCAA
TGAGAGAAGGGTAGTCATCTGGTAAGTATTCTTATCACAATCGTCAGATA
TTGACAATGGGTGGGAATTCAGTGGTTCAGTTCTCACAATCACCATCTAG
AAAGCTGGTGATTGACTTTGAACATAACTACAGCTAAGCACGCTTTTTCA
TCATCTTGGCTAGTTCAATAAAAACCCTAGAAATAATTCCCAATACCATT
AAAGTGTGTTATTTTTAATACCTCATCCCATATTATTAGCACTCTGAGGG
TACTTTTAAATATAAAAACTTCCTAATCAACTCATTCCGTATTATAAATT
TACAACCTATTTTATCCTTGATGCCAACACACCCTTTTATTCTAAGAACC
TTGGGGAAGGC
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATTTTTGCAGGATTTGCCAATAACCCTGAGATGAAAGGGATAA
TTTGCCATGTTTCTAGTTATCTATCTGATTAATCTTCTGCACACGGTTGG
CATGATCATTTTAATGAGAATGGATCCCCAGCTCCATACATCCAAGTACT
TTTACTTGAGCCATCTCTCTTCCTCTGATTCCCACTATTTCATTGCAATT
GTTCTCAAAGTGCCAGTAGGTATATCTGGCTAGAACAAATAAATTCGCTT
AACGGTTTGCGCTCTGTAGTTCTTCACTTCCTGCACCTTTGTAGACCGAG
CATACACTTACTGCCAGCGATGCCCTTGTTAGATACCAGGCCATCAGTCA
CTCTTGCTCTACAAACCACACATGCTTAACAGTGTGTTCACTCTCACTGT
TGATACCTACCTCGGTTAGAACATTACACGTTTTGATAAATTTTCCCTTC
GTTTTCCTATTTACGCCATCTTTGATTCCCTCGTCATTAACTATTTCCCC
TGCACCTTACGTGTACCCTCACCTTTTCTTCTGCTCCGACACTCAGCATT
TCCCATTCCCGACTTCACTCGTGCTGATCACCCTTGCCCCGTGCCCTTAC
CCCGCCACTGTTTCCCTCATCCATTATTGTTCCGTACCCTGTACTCACTC
CCGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_p06.b1 MSMg01no055_p06.b1 CHROMAT_FILE:
MSMg01no055_p06.b1 PHD_FILE: MSMg01no055_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:29 2005
         (272 letters)



>mm_chr2_87744968_87745639
          Length = 672

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%)
 Strand = Plus / Minus

                                                                       
Query: 26  ctgtttaattgctcacttgttttctcatgggaatttggatactactgcttgggttcctag 85
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ctgtttaattgctcacttgttttctcatgggaatttggatactactgcttgggttcctag 413

                                                                       
Query: 86  aagctcatgtgagattaaagtcctaagagcaaaccataaaatgtactgcctttcctggga 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aagctcatgtgagattaaagtcctaagagcaaaccataaaatgtactgcctttcctggga 353

                                                                       
Query: 146 acccaacctttttaaggaaggtgtactttccttgaagaacacaaagggtatgtaaaaaat 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 352 acccaacctttttaaggaaggtgtactttccttgaagaacacaaagggtatctaaaaaat 293

                                                                       
Query: 206 ggaaaatgagaaatgctataatggatttataattttcgtttaagtgttacacaagttttc 265
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 292 ggaaaatgagaaatgctataatggatctataattttcgtttaagtgttacacaagttttc 233

                  
Query: 266 cattcaa 272
           |||||||
Sbjct: 232 cattcaa 226


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space:   174369
Effective search space used:   174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no055_p06.g1 MSMg01no055_p06.g1 CHROMAT_FILE:
MSMg01no055_p06.g1 PHD_FILE: MSMg01no055_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:29 2005
         (155 letters)



>mm_chr2_87626017_87626571
          Length = 555

 Score =  253 bits (131), Expect = 3e-72
 Identities = 149/155 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttgcaggatttgccaataaccctgagatgaaagggataatttgccatgtttctagt 60
           |||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 201 atttttgcaggagttgccaataaccctgagatgaaagggatactttgtcatgtttctagt 260

                                                                       
Query: 61  tatctatctgattaatcttctgcacacggttggcatgatcattttaatgagaatggatcc 120
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 catctatctgattaatcttctgcagacggttggcatgatcattttaatgagaatggatcc 320

                                              
Query: 121 ccagctccatacatccaagtacttttacttgagcc 155
           ||||||||| |||||||||||||||||||||||||
Sbjct: 321 ccagctccacacatccaagtacttttacttgagcc 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 555
Length adjustment: 8
Effective length of query: 147
Effective length of database: 547
Effective search space:    80409
Effective search space used:    80409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)