ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTATAGTTTCTCATGTGTGTGATTTTTTGAGACAATTTCTCTGTGTAA
CACCCCTGGCTGTCTTTGGCTGACATTGTAGACTAGGCTGACCTGAAACT
CACAGAGATCTGCCTGCCTTTCCCCCCAAGTGTGAATTCTTATACTTTTA
ACTTGGAATTTATACATAGTTTTACATTATAACTTACTGCATGAGTTGAT
ATACCCATATCCTTTTTCCATATCTACATACTTTGAGAAAAGAGCTCCAA
AAACAAAGAATTGAAACAAGAAAAAACTTGTAGCTATGTTACATATAAGC
TGATCACAGAATATTGGAAGTGAGTAGTAGTGGTGAGAGTAGACAAGTAC
TTAAAAAAAAAAAGAAAAATCATGACTCAATGAACAAATTATTTTTTTCA
AAATATCAAAGTGAGTGTGACCACAGCATTTAAAATGGAAGAAAAGATAA
GCATGGTGAACTCTGGAGGAAGAAATCTTCAACACCTCAGAAAGTAAGAC
CCCCATTATTTTTATTATTGCCTACTTCATATCAGTTTCTATCTCATAAC
ATCTCTGAAGGTTCACTCAGTATTTATTGTCTACTTAGGATTTCTTCTGT
ACTATCGTAGTCATTAAAGAGTTTTGAGTGAGTGGCTGTTTCCTTGAATG
ATTA

CCTCTATTTTCGTTCTGTTCGGCGTTCGCCGGCTTATCGTACCGCTTTGT
GGTGCTCGGGTCGACGATTCGGTCTAAGTTACATATTACTATTACGGGGT
ACGGCGCGCGCGGCGAGTTGGCACTTATGCGGAGATTTACGCGTGCGCGA
GCGGTGCGCGTACGTATTTTGTTTAGTTGCGGCCAGCGTTCTTTTCGCGC
GCCCGATGATCGCCGGCATGCGAATAACTCCCTAGCACAGCTTATACGTT
ACGTGCCGGTATTCGCGTACGGTGACCCTTATATATACGACGGCTCGGTC
CGCCGGGTGGGCTCTCTCTTGCGACGCCGATCGGCTACCGTACTATGTCA
CGTTATTAACGCGGGTGGCGCCCGCCCCACATTCCATATTCTCACTATTC
GTAACGTGTGGCTGTGTAGTGTCGCGCCCGGAAGGCGCATTCAATGTGCG
TTCGCCTGGGTCGATAACCCGATAGATAGTCGAGAGCGAGCATCATGTTA
CGCGCGCGTTGAGGTTATTTTATTCCTTCGTCGAGAACTGTTAGATTATT
ACCGCGTCTGTGATTATCCGATATCAAATAAACGTTATGTTCGCTCCGGC
GCTTCGAGCACCATCGCATTTAATCGTCCATTCGACGATTACTATTATTT
TTTTTTTCTCCGTTGTTATATATGTGCGTAATCGAACGTGATGCCGTCTA
TCTAACAAGGCCGCGGGTTCCTATCTCCCTAAGCGCCGCGCCTTCGACTT
TATCTTTGTTGTTTGTTGGTAACGAACCGTTTGGTAACTATCGTGGTTAG
AGTGCACCGGATCAGAGTGGGAGTTATATGTAATACTAGGCGGAGACACG
CATTGCGGTCCTGTGTATTATTATCCCGCGCGTTGTGTATTCTCCCTACT
CGTTCCGCGGCGCGTTATCGATACAATAATCCGCGTAGTGGGTGGTCGCG
TCGCGTACCATATTTTCGCACTCCCTATGTTGTTATACCATATTGTTTGC
TTATACGCCGGTGGTTTCTTATTCATGTACCAAGTTATATAACCGCGTTA
TGTTCCCTTTTTTACCAAGTCGGCGCGTGTGCTTCTATCTGCGCCACGAC
ATTTAATTTTGTTGTCTTTN

Query= MSMg01no055_p23.b1 MSMg01no055_p23.b1 CHROMAT_FILE:
MSMg01no055_p23.b1 PHD_FILE: MSMg01no055_p23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:32 2005
         (588 letters)



>mm_chr2_100100990_100101980
          Length = 991

 Score = 1071 bits (554), Expect = 0.0
 Identities = 579/588 (98%), Gaps = 4/588 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatagtttctcatgtgtgtga-ttttttgagacaatttctctgtgtaacaccc 63
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 928 gaattcttatagtttttcatgtgtgtgatttttttgagacaatttctctgtgtaacaccc 869

                                                                       
Query: 64  ctggctgtctttggctgacattgtagactaggctgacctgaaactcacagagatctgcct 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 868 ctggctgtctttggctgacattgtagactaggctgacctgaagctcacagagatctgcct 809

                                                                       
Query: 124 gcctttccccccaagtgtgaattcttatacttttaacttggaatttatacatagttttac 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 808 gcctctccccccaagtgtgaattcttatacttttaacttggaatttatacatagttttat 749

                                                                       
Query: 184 attataacttactgcatgagttgatatacccatatcctttttccatatctacatactttg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 attataacttactgcatgagttgatatacccatatcctttttccatatctacatactttg 689

                                                                       
Query: 244 agaaaagagctccaaaaacaaagaattgaaacaagaaaaaacttgtagctatgttacata 303
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agaaaagtgctccaaaaacaaagaattgaaacaagaaaaaacttgtagctatgttacata 629

                                                                       
Query: 304 taagctgatcacagaatattggaagtgagtagtagtggtgagagtagacaagtactt-aa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 628 taagctgatcacagaatattggaagtgagtagtagtggtgagagtagacaagtactttaa 569

                                                                       
Query: 363 aaaaaa--aaagaaaaatcatgactcaatgaacaaattatttttttcaaaatatcaaagt 420
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aaaaaagaaaagaaaaatcatgactcaatgaacaaattatttttttcaaaatatcaaagt 509

                                                                       
Query: 421 gagtgtgaccacagcatttaaaatggaagaaaagataagcatggtgaactctggaggaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gagtgtgaccacagcatttaaaatggaagaaaagataagcatggtgaactctggaggaag 449

                                                                       
Query: 481 aaatcttcaacacctcagaaagtaagacccccattatttttattattgcctacttcatat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaatcttcaacacctcagaaagtaagacccccattatttttattattgcctacttcatat 389

                                                           
Query: 541 cagtttctatctcataacatctctgaaggttcactcagtatttattgt 588
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagtttctatctcataacatctctgaaggttcactcagtatttattgt 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 991
Length adjustment: 10
Effective length of query: 578
Effective length of database: 981
Effective search space:   567018
Effective search space used:   567018
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)