BAC Information

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BAC

Clone NameMSMg01-056B11
Chromosome2 (Build37)
Map Location 46,724,980 - 46,725,260
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056B11.T7 (MSMg01no056_b11.b1)MSMg01-056B11.TJ (MSMg01no056_b11.g1)
ACCAG283586AG283587
length705695
length of high quality
(start - end)
287 (72 - 358)284 (69 - 352)
definitionCHROMAT_FILE: MSMg01no056_b11.b1 PHD_FILE: MSMg01no056_b11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:39 2005CHROMAT_FILE: MSMg01no056_b11.g1 PHD_FILE: MSMg01no056_b11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:57:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCACCTGACGAATACCGAATGGCAGAGAAGCACTTGAAAAAA
TGTTCAACATCCTTAATCATCACGCAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGG
TGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT
CAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGG
GCATATATCCTTTATATGCCCCCCCACCCCACAAGGACACATGCTCCACT
ATGTTCATAGCAGCCTTATTTATAATAAACAGAAGCTGGAAAGAACCTAG
ATGCCCCTCATCAGAGGAATGGATACAGAAAATGCGGTACATCTACACCA
TGCAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGTC
AAATGGATGGACCTGGAGCGTATCTTCCCGAATGAGGTAACACATTCCCC
ATGAAACTTCTCCCCTATGTTTCCCCTGATATTTGTATATTATCCCCTAA
CCTAGGATACCCTTGATATAATATTTTATTCGCTAATTACCTGTAACTCT
TGCAA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCACGAAATTCTTAGTGTGTGCCAAAAACCGTGAACATA
ATTATTGTGTTGTGATACCCACTGGAACCAGAAAGAGAATACTTGGTTTT
AATGCTCCACTATGTCATTTTCTATGTGTCAATTAGGAAATTCACACAGG
ATTTCTAAGCTTTTGTTAACTCATCCATAAATGGAGAATGGATACCCCAG
ACAAACTTACTAGAAATGGGATGTAAATATTTCCAACTCATATCAAGTAA
TATCTTTTAAAAAAATGCTTCACATATTTTGCATATCTCTTTGCACATTG
GTTATTTCTTTTTATCCCCGACCATTATTTGGGAGTACACATATTTGTGT
TTGTGTGTATATGTCCCTGAATGAATACTTGCTTATATATGAATGTGTCT
TTGTATAAAGGTGATTGTGCGTGTGTGTGTTCTTGCATCGCATGCGTAGG
TATAGATTCTCTCACAGAAGACAGATATCAACATCAGGTGGTTTCCCAAA
CTGTTCCAATCTTTATGTTTTACATAAGATCTCTCCCCATGACTGAGCTT
ACGATCTCGCTAGACTCACTGATCAGTTTGCTCTTGAAATTCTCCAGTCT
CCATTCTCCCTTCTGGTTTTGTACTAAAAACGGCTTCCCCCGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_b11.g1 MSMg01no056_b11.g1 CHROMAT_FILE:
MSMg01no056_b11.g1 PHD_FILE: MSMg01no056_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:57:39 2005
         (284 letters)



>mm_chr2_46724776_46725460
          Length = 685

 Score =  497 bits (257), Expect = e-145
 Identities = 275/283 (97%), Gaps = 5/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   ttagtgtgtgccaaaaaccgtgaacataattattgtgttgtgata---cccactggaacc 61
           |||||||||||||||||||||||||||||||||||||||||||||   |  |||||||||
Sbjct: 205 ttagtgtgtgccaaaaaccgtgaacataattattgtgttgtgataaaac--actggaacc 262

                                                                       
Query: 62  agaaagagaatacttggttttaatgctccactatgtcattttctatgtgtcaattaggaa 121
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 263 agaaagagaatacttggttttaatgctcaactatgtcattttctatgtgtcaattaggaa 322

                                                                       
Query: 122 attcacacaggatttctaagcttttgttaactcatccataaatggagaatggatacccca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 attcacacaggatttctaagcttttgttaactcatccataaatggagaatggatacccca 382

                                                                       
Query: 182 gacaaacttactagaaatgggatgtaaatatttccaactcatatcaagtaatatctttta 241
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 383 gacaaacttactagaaatgggatgtaaatatttccaactcatttcaagtaatatctttta 442

                                                      
Query: 242 aaaaaatgcttcacatattttgcatatctctttgcacattggt 284
           ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 aaaaaatgcatcacatattttgcatatctctttgcacattggt 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)