BAC Information

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BAC

Clone NameMSMg01-056G23
Chromosome2 (Build37)
Map Location 21,981,757 - 21,982,101
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056G23.T7 (MSMg01no056_g23.b1)MSMg01-056G23.TJ (MSMg01no056_g23.g1)
ACCAG283846AG283847
length710698
length of high quality
(start - end)
---346 (74 - 419)
definitionCHROMAT_FILE: MSMg01no056_g23.b1 PHD_FILE: MSMg01no056_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:06 2005CHROMAT_FILE: MSMg01no056_g23.g1 PHD_FILE: MSMg01no056_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAAAAATTGCGGCGCCAAAAAAATNNNNNATTCGNGACCCGCCNNGNAN
ANNNNNNGGGTGACCNGACGCNGAAGGGNANNANANAGNNAANAAANAAN
AAAAGAAGGGAAGGTTTGTCCCCCACAACAAGAGAGAAGGNAGGAGAGGG
ANACCCCGGGACCCGAGCAGGCAACAACGGGAAGAGAAACAAGCAGAGGC
AAACAGAGGGGGCCACGCGGCCACCACCAGCCCAGCGAGAGCCAACAAAT
TTTTGGAAAAGACTGGAAATTTACAGGTAACACAAGCAAGAACGAAACCC
AAACAGGCAAAGATGTTTCCCTGCATATGNAACNCCAAAACAGCCGCACG
ACGGGGGAAGTTTTTCCCCCCCCCCCTTTCAGAGTTAGAAGGCTAGTGAG
GGGAAACATTCGCCAAGTGTGACTAACAATAGAAACTGTCTCTCTCTCTA
CCGCTCCCGCTCTCTCTGTCAGCAACTGACCCTTCTTGTGATGAAATGAC
GAGCATGATATGTCCGCATGGCCTCGAGCGGTCCGAGACTGCCGCGGGCC
GAGCGGCTCGAGCTAATTTCTCCGGGCGGGATGCTCGCCACTCTGGGCAC
GAATGGAACACGCAGGAGCCTGCACGGGAGCCCTCGGTCCACGCGATATT
TTTTTTTTTTTTTTACCCACGCCCAAGTAGTGGGGCAGCACACCGTGCAT
ACAGCACTGG
CAATGCTGTGGGAGGCCTGGCGACCGCCTGTCTCCCAAAATAATTAGGTG
AACTATAGAATTTTTCGCGAAATTCATGAAGTTCTTAGGCAAATGGATGG
AACTAGAAAATATCATCCTGACTGACATAACCCAATCACAAAAGAACACA
CACGGTATGCACTCACTGACAATAAAATGTTTAAAATAAAAAAATAATGT
CATTCATTATTTTAAATTGTAAAAATTAATTTACTTGTCATACACTGTAA
TGCTGGAAAGTTCGCTTAAGGTCTATGTTTAACTAGAGAAGCCAATATAA
ATACAAATCCAGAAACACTTCTTATAACTTCAGCATTTGTCTGTGTCTAT
GGTGATTACCAATAAAAAATAAAATTTATGCATTGTTGAATGATGTTTTT
TAACTACTCAACCACAAAGAAAGTAATCCTGCTAGCTTCTAATAGATTTT
TATTACTTATTAGCTGATCCACATACTTACCACACTTACCACAACAACAA
ATACTTTATAAAATAATTATCAGTACATAAAACACTATATTTTCTGTAGA
CATGTCACAGTGATATGAATCTGATATAGCCTATTGCTTTATCTTCTAAA
ACTTTCCCCTGACGAACGATGCCTAGTGTCATAGGAAATTGTTTCCCGCC
GATCTATATTTCAAGGGCTTAAACTTAAAAATTTACTATTCCTCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_g23.g1 MSMg01no056_g23.g1 CHROMAT_FILE:
MSMg01no056_g23.g1 PHD_FILE: MSMg01no056_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:06 2005
         (346 letters)



>mm_chr2_21981397_21982141
          Length = 745

 Score =  601 bits (311), Expect = e-176
 Identities = 338/347 (97%), Gaps = 3/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatgaagttcttaggcaaatggatggaactagaaaatatcatcctgactgacataaccc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 705 tcatgaagttcttaggcaaatggatggaactagaaaatatcatcctgagtgacataaccc 646

                                                                       
Query: 61  aatcacaaaagaacacacacggtatgcactcactgacaataaaatgtttaaaataaaaaa 120
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 645 aatgacaaaagaacacacacggtatgcactcactgacaataaaatgtttaaaat-aaaaa 587

                                                                       
Query: 121 a-taatgtcattcattattttaaattgtaaaaattaatttacttgtcatacactgtaatg 179
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aataatgtcattcattattttaaattgtaaaaattaatttacttgtcatacactgtaatg 527

                                                                       
Query: 180 ctggaaagttcgcttaaggtctatgtttaactagagaagccaatataaatacaaatccag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctggaaagttcgcttaaggtctatgtttaactagagaagccaatataaatacaaatccag 467

                                                                       
Query: 240 aaacacttcttataacttcagcatttgtctgtgtctatggtgattaccaataaaaaataa 299
           ||||| |||  ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 466 aaacatttcaaataacttcagcatttgtctgtgtctatggtgattagcaataaaaaataa 407

                                                          
Query: 300 aatttatgcattgttgaatgatgttttttaactactcaaccacaaag 346
           |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 406 aatttatgcattgttgaatgatgttttttaactactcaac-acaaag 361


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 745
Length adjustment: 9
Effective length of query: 337
Effective length of database: 736
Effective search space:   248032
Effective search space used:   248032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)