BAC Information

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BAC

Clone NameMSMg01-056I21
Chromosome2 (Build37)
Map Location 73,414,634 - 73,414,973
singlet/doubletsinglet
Overlap geneChrna1
Upstream geneLOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1
Downstream geneChn1, Atf2, Atp5g3, LOC667729, LOC100040172, Lnp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056I21.T7 (MSMg01no056_i21.b1)MSMg01-056I21.TJ (MSMg01no056_i21.g1)
ACCAG283938AG283939
length703738
length of high quality
(start - end)
340 (71 - 410)127 (128 - 254)
definitionCHROMAT_FILE: MSMg01no056_i21.b1 PHD_FILE: MSMg01no056_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:15 2005CHROMAT_FILE: MSMg01no056_i21.g1 PHD_FILE: MSMg01no056_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGA
ATTCTTCCTTTTCCTCTCGAAAAATTCTATTACATCGGCTTGCTTACTCA
TTCTTTCACTGATGGTCCCACGGGCTGCTTCCTGGCAATGGACTACAGTA
ATGTTTCTATAAACCCTGTGGAGGGAAACTGTATCTCCTCACCTTGCCCA
TTGAAGCCACTCTAAGAAGTAGAGATTGAGGTGGAAATTTCTCACAAAGG
GCATGGGCAAGGGTAGGAGGTGAGTGTCTCCAGCATGCTGGCATGCCCAT
TCCCCCAGTCTTCCTCTCTTGGTGAATCATTAGGCTACATGAATAGCTTT
TCTGGGACACACTGCTGACCCTCTTGCTTTCTAGTGTGTTCCTCCTGTGC
AAAATCTGGGTCTTTGCACAACACCCCCTTTTGAGAGTCATCAGCTGGCC
TGCAATTTGGGGGAAGTTCTATGAGAAAGCTCTTTGATACTCTTGGAAAT
TTTGTGTTTTAGACAACTTATGAAGCTAGATGTGAGATGTGTCTAGGTCG
GTGTTCATGGGGGTCACAGCAAAGACGCTTGAGCTATGCCTGGAGATTTG
CTAAAGCTCACATCTAATTAAAGATTACATTTTTACCTTTATGGATGACA
TTAACTTGTCTGGAACCCTGTTTTCTATCTAGTAAAAGTACCTGTCTAGG
TAT
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTACAACAAAAATTCTCGGNCCGGGAAGCAAAACACAGG
AAGGGGTGTTAGGAAAAGCAGTCTGCAAGAAGGGCGAACGCAGTGGGCTT
CTTCAGTTGATTCCTGTGGGTTGGGTTGTTTGGTTTGTTTTGTTTTTGTT
TGTGTTGCTATTGTTTCTCTCTGTAGCCTTGGCTGTCCTTGAACTCACTC
TGTATAAGAGGCTGCCCTTGAACTGAGAGATCCACCTTTCTGCTCCTCCT
GAGTGCTTGGATCAAAGGTTTTTTTTTCTCCCTTCCTGCTGATTTCTGTT
AGTTTATGCGTATTTATTTCCCGCCCCCCTTTCTTTTTGCTCACACAGTT
GACCTTAACATTTATATTCACTACTTGTAACCAGACGATCCATTTTTTTG
TATGCTGTTTCTTATATTGCTGTCAAGCCTAGATTGTGTTGGTTTCTGAC
GTGTTTGTGCTGTTGTTTATCTTGGTTAAGATTTCGCTTCGTATTCCTTA
AGTCTGGTCTCTTATTTCCGTACTCTGGTCTATTTGTTATTTTATCGGAT
ATGACTTGTTTATTGTATTTAGATGTGTCAGCCCTACTATTCCTGACCTA
TTTGTTTTTTTCTTTTCAATTCTTCTCTCCTTTTGGTACTATCCATCGTA
TTATTTGTTTTATTACCCACTACTTCACTCTAATATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_i21.b1 MSMg01no056_i21.b1 CHROMAT_FILE:
MSMg01no056_i21.b1 PHD_FILE: MSMg01no056_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:15 2005
         (340 letters)



>mm_chr2_73414434_73415173
          Length = 740

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaattctattacatcggcttgcttactcattctttcactgatggtcccacgggctgctt 60
           |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 540 aaaattctattacatcggcttgcttactcattctttcactgatggtcctatgggctgctt 481

                                                                       
Query: 61  cctggcaatggactacagtaatgtttctataaaccctgtggagggaaactgtatctcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 cctggcaatggactacagtaatgtttctataaaccctgtggagggaaactgtatctcctc 421

                                                                       
Query: 121 accttgcccattgaagccactctaagaagtagagattgaggtggaaatttctcacaaagg 180
           |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 420 accttgcctattgaagccactctaaggagtagagattgaggtggaaatttctcacaaagg 361

                                                                       
Query: 181 gcatgggcaagggtaggaggtgagtgtctccagcatgctggcatgcccattcccccagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcatgggcaagggtaggaggtgagtgtctccagcatgctggcatgcccattcccccagtc 301

                                                                       
Query: 241 ttcctctcttggtgaatcattaggctacatgaatagcttttctgggacacactgctgacc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctcctctcttggtgaatcattaggctacatgaatagcttttctgggacacactgctgacc 241

                                                   
Query: 301 ctcttgctttctagtgtgttcctcctgtgcaaaatctggg 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 ctcttgctttctagtgtgttcctcctgtgcaaaatctggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)