BAC Information

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BAC

Clone NameMSMg01-056L21
Chromosome2 (Build37)
Map Location 145,184,768 - 145,185,059
singlet/doubletsinglet
Overlap geneSlc24a3
Upstream geneLOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneLOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L21.T7 (MSMg01no056_l21.b1)MSMg01-056L21.TJ (MSMg01no056_l21.g1)
ACCAG284076AG284077
length717712
length of high quality
(start - end)
322 (42 - 363)295 (72 - 366)
definitionCHROMAT_FILE: MSMg01no056_l21.b1 PHD_FILE: MSMg01no056_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:29 2005CHROMAT_FILE: MSMg01no056_l21.g1 PHD_FILE: MSMg01no056_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCGGCGCTATACGACTCCTATAGTTCGAGAATCCGCGGAAT
TCCTCCTGATTTCCGAAGATGATCTTTGCTGGTAAGCCTCCGGAAGATGG
CTGGACTTTGTCTGACTACAACCTTCAAAAGGAGTCCACCCTTCATCTGG
TGTTGAGACTTTGGGGTGGTGCTAAGAGAAGGAAGAAGAAGTCTTACACC
ACTCCCAAGAAGAACAAGCATAAGAGGAAGAAGGTTAAGTTAGCTGTGCT
GAAATACTGTAAGGTGGATCAAAATGGCAAAATTAGCTGACTTCGAGTGT
CCTTCTGATGAGTGTGGTGCTGGATTTTTCATGGGAAGCCACTTGGACAG
GCATTACTGTGTTTTTTGTTGTCTCCCTCCCTGCTTCAACAAACCAGAAG
ACAAGTAGTTGTGTATGCATTAATAAAAAGAAGAAACTATTAGAGAGATT
AGTCTCTCTTTTGTCATTTTGTTTAGGTGTGCGTGTGGACTGACTCACAC
ACATAAGAACATTTGCATATGAGCTTGTCATGCTGTCAAAGTAATAGCCA
TATTTCTTAACCAGAACGAATCTGCCTATCTTATTATCATAAGCCATCTT
TTTCCCTTTACCCCTAAATTTTGCATGTTCTGCGCGATTTATATTGGTAT
TTAGGACATCTTATAGCGGCACTTTTTTTTTATACTTGATTGCACTCTGA
CCCCCCTGTTAAAGCAC
ATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACAGGCAAGCCTCAATTTGGAAAAGGTTTGA
GACAAACATGATGGAATAAAACATATGAATAGCCCTAATAGATCCAGTAT
TCCTACAAATCAATAAGAAAAACATTAAGACACACAATACATATCTACAC
AAGAAGCCACAAATCTCTAAAGAATAAATGCCCAATGGAAAAACCAGCAC
AGCTTAGACGCTCCAGTCTCACTAGTTTTGAAAAATACAGATTAAAAAAT
GACAGAGGACTCACATCCTTTGTGGATTTAGCAACAATTCAGAAATGATG
CTCTAGAGGAAGGTTTAGTATCCTCCGCTCCTCAGAAGCTCAGAATGTCT
GCAAAATAACACAGCAGTATGGATCAAAAGCCGTACAGCATGTAGATGCC
TTCTGACCCAGGAATTCAGCTTCTTGAATAGGTCATCAGGCATTGAAATC
CCATGTATGTACCAGGATGCTCATGAAAGATGTGCGATTTATTTAATTGG
ACCAAAGTGCACCAAATGATAAGTCAGCAAATACGGTCCACCCATCCTCT
GAACTGTAGAGCTGCTAACTATGATAGTGGGTGGGCAGTTGTTCCTGACA
TGGGAAACTCAGCAAAAAACCAAGAGACTAGTACAGTAGACTGTTTCCTG
GTTTTTAATGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l21.g1 MSMg01no056_l21.g1 CHROMAT_FILE:
MSMg01no056_l21.g1 PHD_FILE: MSMg01no056_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:29 2005
         (295 letters)



>mm_chr2_145184568_145185261
          Length = 694

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%), Gaps = 1/293 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcaagcctcaatttggaaaaggtttgagacaaacatgatggaataaaacatatgaata 60
           ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 201 aggcaagcctcaatttggaaaagttttgagacaaacatgatggaataaaa-atatgaata 259

                                                                       
Query: 61  gccctaatagatccagtattcctacaaatcaataagaaaaacattaagacacacaataca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gccctaatagatccagtattcctacaaatcaataagaaaaacattaagacacacaataca 319

                                                                       
Query: 121 tatctacacaagaagccacaaatctctaaagaataaatgcccaatggaaaaaccagcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tatctacacaagaagccacaaatctctaaagaataaatgcccaatggaaaaaccagcaca 379

                                                                       
Query: 181 gcttagacgctccagtctcactagttttgaaaaatacagattaaaaaatgacagaggact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcttagacgctccagtctcactagttttgaaaaatacagattaaaaaatgacagaggact 439

                                                                
Query: 241 cacatcctttgtggatttagcaacaattcagaaatgatgctctagaggaaggt 293
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 440 cacatcctttgtggacttagcaacaattcagaaatgatgctctagaggaaggt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 694
Length adjustment: 9
Effective length of query: 286
Effective length of database: 685
Effective search space:   195910
Effective search space used:   195910
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)