BAC Information

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BAC

Clone NameMSMg01-056M05
Chromosome2 (Build37)
Map Location 115,917,931 - 115,918,394
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043232, LOC100043236, BC052040, Mrg1, G630016G05Rik, 2810405F15Rik
Downstream geneLOC433464, Tmco5, LOC100043557, LOC241621
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056M05.T7 (MSMg01no056_m05.b1)MSMg01-056M05.TJ (MSMg01no056_m05.g1)
ACCAG284092AG284093
length700707
length of high quality
(start - end)
462 (72 - 533)292 (73 - 364)
definitionCHROMAT_FILE: MSMg01no056_m05.b1 PHD_FILE: MSMg01no056_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:30 2005CHROMAT_FILE: MSMg01no056_m05.g1 PHD_FILE: MSMg01no056_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAGACCGCGGA
ATTCATAGCCTTCTCCCGACATGATTCTCTCACCTGGTGTCATACCACAG
TCCACGGGAGCTTAGCGTTCATCATGTACATAAGTTTTCTTGGTCTTCTT
GAAATCACAACTCAAAGTAAAATGACGACACACAATCACCAATGAAGGGA
TTTTTTTTAATTGTTGTTTCAGAGTTCCCTGTTTCTCTTTCCAACTGCTG
AACATAATCATCTATATATAAAGTTAAGATAAAAAGTATATAATCTTCAT
GTTTAATATCTCATCAACATAAAAAGAACAAACCAAGCTTGCTTTATGCT
TTAGAAACCTAGATAATGGGCTGGATGGTCAAAATAGGAAACATTCAACT
CAGTCAGACCATGAACTTTTTCCATGATGCTGAGGCAGTATGTATTCCTC
TACTCTATGAGCCCCAAGCTATCTATGACTTAATCTTCTGTGGAGCTCTC
AGGGCTACAGAGACAGTATGCCTTTGAACAGTCTTGAACAGTCGGTAAGG
CAGAGACCAAGTGGTTCTCTATTGCCTAACATGCATAGAATCACAGGTCT
GGAGACACTCTGATATTATCTTAGGGGCCAGCCACTGGTAATTCCAGAGC
CCTGCCTATGTTCATACCACAATAGGCTAACTCATCTGACCCCCCAGGCT

ATGATAGAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAATTCCAGGACACCGGCCTCGGGTACTC
ATTTGTCGTTATGCTACACATAGAGATTGTGTGGCAATGAATTTATACAC
AAACTCAAGAGCTGGCAAGATGGCCATTAGGAACAGACACCTGGCACTAA
GCCTGACATCCAGGGTTTGATCCATGAAACTCAGAGCATAAAAGGAGAGA
AGTAATTCCCACAGTCTGACCTCTACAAGAACTGGATGGCATGGCCATTT
ATCTCTCTCAACCTAATATATACACACAATTCTTTAATAACATAAAAAGA
GAGAGAAACCTGAGACCAGAAATAATTAGGTGCATATCTTTCCCAAAACA
AGAGTATCTATAAGGCTACATTTTCAAGACACCATTGAAGATGCTAACCT
TTTACCCCACCCTGTTGCTTTGGTGTGCTCTTTCTCTTCATTTTTATCCC
CACTCCAACTTTCTACTCTTTGCTAGCAAGTTCCTATTCAGCCTCCAAGC
CTTAGCGAAAGAGAGGTCTCTTTTTTAGAGGTGCTCCTAAGACCTGTCCC
AGATCTGGGGTTCTTGTGCTCTTGACTTAATCGGCGGTTTCCTTCTTACT
TCTGTTTTCAGTTTCTTCTTCCCCACAAAGTTAGTGCCTGGACAAAGAAC
CCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_m05.b1 MSMg01no056_m05.b1 CHROMAT_FILE:
MSMg01no056_m05.b1 PHD_FILE: MSMg01no056_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:30 2005
         (462 letters)



>mm_chr2_115917731_115918594
          Length = 864

 Score =  870 bits (450), Expect = 0.0
 Identities = 460/464 (99%), Gaps = 2/464 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgattctctcacctggtgtcataccacagtccacgggagcttagcgttcatcatgtacat 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgattctctcacctggtgtcagaccacagtccacgggagcttagcgttcatcatgtacat 605

                                                                       
Query: 61  aagttttcttggtcttcttgaaatcacaactcaaagtaaaatgacgacacacaatcacca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aagttttcttggtcttcttgaaatcacaactcaaagtaaaatgacgacacacaatcacca 545

                                                                       
Query: 121 atgaaggga--ttttttttaattgttgtttcagagttccctgtttctctttccaactgct 178
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 atgaagggattttttttttaattgttgtttcagagttccctgtttctctttccaactgct 485

                                                                       
Query: 179 gaacataatcatctatatataaagttaagataaaaagtatataatcttcatgtttaatat 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gaacataatcatctatatataaagttaagataaaaagtatataatcttcatgtttaatat 425

                                                                       
Query: 239 ctcatcaacataaaaagaacaaaccaagcttgctttatgctttagaaacctagataatgg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctcatcaacataaaaagaacaaaccaagcttgctttatgctttagaaacctagataatgg 365

                                                                       
Query: 299 gctggatggtcaaaataggaaacattcaactcagtcagaccatgaactttttccatgatg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gctggatggtcaaaataggaaacattcaactcagtcagaccatgaactttttccatgatg 305

                                                                       
Query: 359 ctgaggcagtatgtattcctctactctatgagccccaagctatctatgacttaatcttct 418
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 304 ctgaggcagtatgtattcctctactctgtgagccccaagctatctatgacttaatcttct 245

                                                       
Query: 419 gtggagctctcagggctacagagacagtatgcctttgaacagtc 462
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gtggagctctcagggctacagagacagtatgcctttgaacagtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 864
Length adjustment: 10
Effective length of query: 452
Effective length of database: 854
Effective search space:   386008
Effective search space used:   386008
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)