BAC Information

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BAC

Clone NameMSMg01-056N09
Chromosome2 (Build37)
Map Location 23,905,597 - 23,905,882
singlet/doubletsinglet
Overlap genenone
Upstream geneAcbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt
Downstream geneTbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056N09.T7 (MSMg01no056_n09.b1)MSMg01-056N09.TJ (MSMg01no056_n09.g1)
ACCAG284144AG284145
length703696
length of high quality
(start - end)
320 (51 - 370)286 (76 - 361)
definitionCHROMAT_FILE: MSMg01no056_n09.b1 PHD_FILE: MSMg01no056_n09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:36 2005CHROMAT_FILE: MSMg01no056_n09.g1 PHD_FILE: MSMg01no056_n09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCCTCTTACCAACAGACTTGGAGGAGGAAGCAGCTCGTTA
TGAGAGAAAAGGGTACCAGGCAGATAAAATGCTAGCTAATCAGTTAAGGA
AAAAGCCAAAAGCGGCTGGCGAAGGCCAGCATGCTGCTCGGCCTCCGGGC
AGTCAGCTTCAAGGTCATAGTGCACCTCCGCCCTATGCGGAGCCCCCACC
CTGCGTAAGGCGTCAGCCCTGCGCAGAGAGGCAATGGACAGAGAGGCAAT
GGCAGACTCGTTCATTCCTAGATAGGAACAAAGGAAAATGCAACAGGCAT
TTCCGGTCTTTGAAGGAGTCGAGGGCGGGCGTGTCCACGCTCCGGTAGAG
TATGTGCAGATTAAAGAGCTTGTCGAGTCGGTCAGTAAATATGGAACCAA
TGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACTAA
CTCCTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGTATGGGT
AAATATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGCGCACCG
CCTGATCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGACTTTT
GACTTGCCAACTGGTCAGGGAGCTTATACTGCTGATCCAACTCAACTACC
ACT
NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAATCCATTTCCTTGGACCTCCTAG
ATAGTACTCCCATTCCAATTTGCCTAAACTAAACAAACTGTATCCAAATA
ATCTTGAAAGGAAAACACACAAATGCTAAATTAATCACACACACACACAT
ACATATACACACGGGAAGAAATTCTTTAACACCCAAAACATATGGAGAAT
TTCCAAACATTACCTTTCAAGGATGCTTTGAACATTGTTAAGACTCCTAA
TCCAAATTATTATTTTGATTCCAATTTCTTTGTCTAAACTTAAACTCCCA
GTAACAATGCATGGACTTGCTCTCGCCCATGGCATTTTCAATACACAGAA
AAGATCATGCTTGTCTATGACTGTTGGTATCAGGACATCTGAAACTCTGG
ATATCACATAGGTGCGACCCACACACCTGTTGCCAAGGCAACATCCACCA
TATTCCCAGAATCTACTTGGCTCACCTCCCACCTTTACCTGTTACTATGT
CACCACCCATATACAAAGGAAGGCCCCTCTGATCTCTCTCTCTCCCCACC
CCACCCCCTTATCTTTCTGCTGCCACCATGCCCTTTTCTCTCTCAATAAA
CCCACGTGAAACTGTTTGGTCTGCTGTGATCTTTCTGGACTCACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_n09.g1 MSMg01no056_n09.g1 CHROMAT_FILE:
MSMg01no056_n09.g1 PHD_FILE: MSMg01no056_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:36 2005
         (286 letters)



>mm_chr2_23905397_23906082
          Length = 686

 Score =  538 bits (278), Expect = e-157
 Identities = 284/286 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatccatttccttggacctcctagatagtactcccattccaatttgcctaaactaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 aaatccatttccttggacctcctagatagtactcccattccaatttgtctaaactaaaca 260

                                                                       
Query: 61  aactgtatccaaataatcttgaaaggaaaacacacaaatgctaaattaatcacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgtatccaaataatcttgaaaggaaaacacacaaatgctaaattaatcacacacaca 320

                                                                       
Query: 121 cacatacatatacacacgggaagaaattctttaacacccaaaacatatggagaatttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatacatatacacacgggaagaaattctttaacacccaaaacatatggagaatttcca 380

                                                                       
Query: 181 aacattacctttcaaggatgctttgaacattgttaagactcctaatccaaattattattt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 381 aacattacctttcaaggatgctttgaacattgttaagactcttaatccaaattattattt 440

                                                         
Query: 241 tgattccaatttctttgtctaaacttaaactcccagtaacaatgca 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattccaatttctttgtctaaacttaaactcccagtaacaatgca 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)