BAC Information

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BAC

Clone NameMSMg01-057A10
Chromosome2 (Build37)
Map Location 61,302,543 - 61,302,787
singlet/doubletsinglet
Overlap genenone
Upstream genePla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10, Dpp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057A10.T7 (MSMg01no057_a10.b1)MSMg01-057A10.TJ (MSMg01no057_a10.g1)
ACCAG284286AG284287
length758759
length of high quality
(start - end)
339 (139 - 477)246 (134 - 379)
definitionCHROMAT_FILE: MSMg01no057_a10.b1 PHD_FILE: MSMg01no057_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:50 2005CHROMAT_FILE: MSMg01no057_a10.g1 PHD_FILE: MSMg01no057_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTCCTTCCTTTCCTTC
CCCCCTCTTNNTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTC
AAAGAGGAGCCGCGGAATTCCTTGGATCCCGCAATACAATACTTTGTAAG
TCAGTATATGGGTACTGGGAATAGAACCTAGGTTCTCTGGAAGCATAGTC
AGTGCTCTTAGCTACTGAGTCATCTCTCCAGTCCTCTGTGGAGGGGAATT
TCTGGGTCAAATGATAATTCTACGTTTTACTTTAGCGGGGAATGCCAAAC
TGCTTCCATAATGGCTGTGCCATTTTACATTTCCACTAGCAATGCACAAA
GGTTCCAATTTTTATACATCTTCACCAACACTTCTTGTAGTCCATGTAAA
ACAACCATAGTTGTCATGACATCTATGAACCACAGCAATGACCAGCATGG
CAATAATGGCACTCACTCATATGTTAGAACACACTAACAGCAGTCTAACT
GGACTTAAGGCCCATTTAGCATTCCTAGTATTAATACTAGAAACTTATCC
TGCTTCCTTGGATTAGTGAAATCATGGATCTTAGAAAAGACCTGAATACC
ACTTTACTAGACAAGTATAATTGCAAACTACATTCTAAATGTTACCTTTA
TATCCACAGATAACTGTAGGTACTGCCCTTCTTAAGAGCAGCCTTCTCTT
TCATCAGAAAATGGAGGGCTTTCTCAGAAAACCATTAAGTGGATACTATT
ACTGAGAA
GGTGTGTTTTTTTTTTGTTTTTCCTTTTTTTTTTCCCCTNNTCCCCNTCA
CACATACATTCTATGATATGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAGACTTTATTCC
TCTATTCTTTAAATTCATACATGCATTTATTTCGTATCCTTTTAAAATTT
TTGAACATATTTATAATTATTCTTTAGAATTTCTTGTGTATGATTTTGTC
TAAGTTGTTCTCATAGGCACCATCACTATGGACTGGTAATCTAGGACACT
GTCTTGGGTTATCATGTTGCCTGACTTTGGGACTTGCACATCTCTCATTG
CTTGCGCCTTTGAGTATGAGTGTCTGGTCTATCCTGAGCAAGCATTTGGG
CCTCTGTTAGCTGTCAGCCTATCTTGGTTGGCTTGGGATTCACTCCGTGA
TGCCTAAAGTTTAGTGTTGGGCCCCCCCCAAGAATGATTCTTATGTAGAG
CGGCTAATGCGGTTTCAGATCATCTAAGGCAGCATTCTCAATCTGTGGAT
TCGATACCCCTTTGCAGGCCAAATGAACCCTTTCATAGGTGCCCCCTAAT
ACCATCGGAAATTACCGATATTTACATTACAGATTATTATAATAGGGAAA
AATTACTGTTATTACCGTATCAACATATATGGCTGCTGTATCACTGTTAC
CTAAAATAATTGTTTTACGGAATTCCCTAGCCTTGTTTAATTTGCACCAA
TTATTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_a10.g1 MSMg01no057_a10.g1 CHROMAT_FILE:
MSMg01no057_a10.g1 PHD_FILE: MSMg01no057_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:50 2005
         (246 letters)



>mm_chr2_61302343_61302987
          Length = 645

 Score =  460 bits (238), Expect = e-134
 Identities = 244/246 (99%), Gaps = 1/246 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatgaagactttattcctctattctttaaattcatacatgcatttatttcgtatcctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 aatgaagactttattcctctattctttaaattcatacatgcatttattt-gtatcctttt 259

                                                                       
Query: 61  aaaatttttgaacatatttataattattctttagaatttcttgtgtatgattttgtctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaaatttttgaacatatttataattattctttagaatttcttgtgtatgattttgtctaa 319

                                                                       
Query: 121 gttgttctcataggcaccatcactatggactggtaatctaggacactgtcttgggttatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttgttctcataggcaccatcactatggactggtaatctaggacactgtcttgggttatc 379

                                                                       
Query: 181 atgttgcctgactttgggacttgcacatctctcattgcttgcgcctttgagtatgagtgt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 380 atgttgcctgactttgggacttgcacatctctcattgcttgtgcctttgagtatgagtgt 439

                 
Query: 241 ctggtc 246
           ||||||
Sbjct: 440 ctggtc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 645
Length adjustment: 9
Effective length of query: 237
Effective length of database: 636
Effective search space:   150732
Effective search space used:   150732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)