BAC Information

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BAC

Clone NameMSMg01-057F16
Chromosome2 (Build37)
Map Location 8,727,860 - 8,728,021
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057F16.T7 (MSMg01no057_f16.b1)MSMg01-057F16.TJ (MSMg01no057_f16.g1)
ACCAG284530AG284531
length752694
length of high quality
(start - end)
96 (190 - 285)162 (123 - 284)
definitionCHROMAT_FILE: MSMg01no057_f16.b1 PHD_FILE: MSMg01no057_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:16 2005CHROMAT_FILE: MSMg01no057_f16.g1 PHD_FILE: MSMg01no057_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTNNTTTTTTTTTNNNTTCTTTTTCTTTTNTTCCCCTTTTCTTTCA
AAGCACATATCGAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCACAAGGTCTCCCTTCAGTTTTAAGCTAAAATTG
TTTACCTTTAACTACTTAAGAATTTTAGAGTTATCTCATGTCTGAAGAAC
GCAATTGATATTATTGAATACAGGAACTGCATAATAACCACACCCAATTC
CCCTAAGTGTAGTCACTCATGAGAGTCAACAAAGCAGGAAAAAAATTACT
AAAGCTAAACAACACCAAACAGTGTCCCTTTTCACCAACACTTGAGTTTT
TATCATCTATGATATTACCTTATATTATTTATGTTACATTGTGCCTTCTT
TGCTCATAGTGCCCAGATTAAACAACTCTTACGAAACTCTATTGTAACTT
CACCAACTGACATATGGTGAAGGGATGCGCCCTGCTACTCAGCTTCTTGT
TTCTGAACATAGATGTGATGATTTTGGACACATAGCTCTTGTACTTTTAA
CTTTTGTTGCGAGGCCTGGCCTTTGCTGTCGCTCCAGTCTGAAGACAGCA
AGGATGAACCATCTGGATCGCTTCTACTCCAATGTATCCTCAGTGTATTA
TCTCCTACTGTATCCGTTTCTACACAGAGAGTTGAGACGTGAACTAAACT
AAACCACTTACTCTATTGGAGTTCTCTAATACACCACCACGCATTTCCTG
CT
TCCTCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTGACTACACTTATATTAAAA
GTAATTAGTTTTACACAAGCCCAAATATTAAACTAAATATCTCTATGCTT
TCCTGCTTGATATGTTATGAATAATATCTAAAAAGTCCAAATTCTACTAT
CATCTGCTATTTATTACTTTACACCACATTATACACAATATAATTTAAAA
TTATTATCACAGCGATTAAAGATAGATCCTTTCAGGGCAAAGGGTTGTGC
TCACATTCAGCCTTTTAATTTGATATTCTGTGAAGCTGGAAGACTTACTA
AAGTCTCTACTGCTCTGCACGCTACATGTCTATGTTCATATAAAAATAGT
CCCCCTCTCAAGTTTTTAACCCATTTGCAATATGCTAAAATGTGAATGAT
GCTTATAACTGACATTCACTATATCCATTACAAAATCTTACTGTTACGTA
TTTACTATTAGCTGCATTCTTGATGCTCGCACTAATTGCACAACGCACTG
ATCCTGTAAAACCGAGGTGCCCTTTTATCACTAAAAGTCAATTTCTAACT
CATGCTGATCTCCATCCTATACTGGTCCATATGATCATCTATGTCTCATC
TAATTCCCCCCCCTCTGTATCTCGTCATTTTTGTCTCCAACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_f16.g1 MSMg01no057_f16.g1 CHROMAT_FILE:
MSMg01no057_f16.g1 PHD_FILE: MSMg01no057_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:16 2005
         (162 letters)



>mm_chr2_8727660_8728221
          Length = 562

 Score =  306 bits (158), Expect = 6e-88
 Identities = 161/162 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatattaaactaaatatctctatgctttcctgcttgatatgttatgaataatatctaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatattaaactaaatatctctatgctttcctgcttgatatgttatgaataatatctaaa 260

                                                                       
Query: 61  aagtccaaattctactatcatctgctatttattactttacaccacattatacacaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagtccaaattctactatcatctgctatttattactttacaccacattatacacaatata 320

                                                     
Query: 121 atttaaaattattatcacagcgattaaagatagatcctttca 162
           |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 atttaaaattattatcacagtgattaaagatagatcctttca 362


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 162
Length of database: 562
Length adjustment: 8
Effective length of query: 154
Effective length of database: 554
Effective search space:    85316
Effective search space used:    85316
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)