Query= MSMg01no057_g10.b1 MSMg01no057_g10.b1 CHROMAT_FILE:
MSMg01no057_g10.b1 PHD_FILE: MSMg01no057_g10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:20 2005
(560 letters)
>mm_chr2_115113158_115114117
Length = 960
Score = 1025 bits (530), Expect = 0.0
Identities = 554/572 (96%), Gaps = 16/572 (2%)
Strand = Plus / Minus
Query: 5 gaattcttcagatattctttattctacctgctgtctttctgcctttgtcttctaggggga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 gaattcttcagatattctttattctacctgctgtctttctgcctttgtcttctaggggga 879
Query: 65 atgttaaaacaacaggtttacctgaataactggcagttttgcttcacagattgttagact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 atgttaaaacaacaggtttacctgaataactggcagttttgcttcacagattgttagact 819
Query: 125 gttgtgaggtatg----------------cacacacacacacacacacacacacacacct 168
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 818 gttgtgaggtatgcgcgcacacacacacacacacacacacacacacacacacacacacct 759
Query: 169 ctgtagtataaataagtaccaccgagtatattcaaatacgttgctttatcttgacatgaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 ctgtagtataaataagtaccaccgagtatattcaaatacgttgctttatcttgacatgaa 699
Query: 229 gtactttagaaatgaggattgctgctccagctctatttatttttatttacttcaaatgtc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 gtactttagaaatgaggattgctgctccagctctatttatttttatttacttcaaatgtc 639
Query: 289 attccacccttaactcatcattgttaaaatctactttaaatgtgcactttatagatcatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 638 attccacccttaactcatcattgttaaaatctactttaaatgtgcactttatagaccatt 579
Query: 349 gcttcacaaactgaccatgaagaacagtcagttttcctaagtttttattctacttgtatt 408
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 578 gcttcacaaactgaccatgaagaaaagtcagttttcctaagtttttattctacttgtatt 519
Query: 409 gtattttacaaagtacgatgaatatggcttttctgaaaaaaaaaaaaaggtatacaaatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtattttacaaagtacgatgaatatggcttttctgaaaaaaaaaaaaaggtatacaaatt 459
Query: 469 aaaagtctgtgttctcattattagagtttttggactggaattgctgttaaatttccataa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 aaaagtctgtgttctcattattagagtttttggactggaattgctgttaaatttccataa 399
Query: 529 aaattagcaagtcctcattcccaatttctatg 560
||||||||||||||||||||||||||||||||
Sbjct: 398 aaattagcaagtcctcattcccaatttctatg 367
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 560
Length of database: 960
Length adjustment: 10
Effective length of query: 550
Effective length of database: 950
Effective search space: 522500
Effective search space used: 522500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_g10.g1 MSMg01no057_g10.g1 CHROMAT_FILE:
MSMg01no057_g10.g1 PHD_FILE: MSMg01no057_g10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:20 2005
(506 letters)
>mm_chr2_115036910_115037815
Length = 906
Score = 955 bits (494), Expect = 0.0
Identities = 503/506 (99%)
Strand = Plus / Plus
Query: 1 cagaacagaagcagagaacagatgtctgtgtccaactcccctccccagcaggagtgtttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 cagaacagaagcagagaacagatgtctgtgtccaactcccctccccagcaggagtatttt 260
Query: 61 accaatggctctgtcctcagtgtatccatggagtgtgacatgaattcgcataccccagta 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 accaatggctctgtcctcagtgtatccatggagtgtgacatgaattcacataccccagta 320
Query: 121 gaccaaggtatggatggaaaactgcatagagctcttttgtcatgcaaggaaaatggattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccaaggtatggatggaaaactgcatagagctcttttgtcatgcaaggaaaatggattt 380
Query: 181 atatcataattaaagtttcaatgacagtgttactccaaatatgttttaacttcatcccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatcataattaaagtttcaatgacagtgttactccaaatatgttttaacttcatcccta 440
Query: 241 agtatatcaaaaaactgttttattctgatgttatcatttgtccagaaagtatttttagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtatatcaaaaaactgttttattctgatgttatcatttgtccagaaagtatttttagta 500
Query: 301 aattcatagagaactctatagttttggattttcaaaatgaacaataagtttctttagttt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcatagagaactctatagttttggattttcaaaatgaacaataagtttctttagttt 560
Query: 361 tgctgaggcttctaatcatcaaacaaatgcaatcatgaaggatcttctttatcctagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgaggcttctaatcatcaaacaaatgcaatcatgaaggatcttctttatcctagaaa 620
Query: 421 gtagtaatataactaagaactttgaattggaaatactgaacccatttaactatagacatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtagtaatataactaagaactttgaattggaaatactgaacccatttaactatagacatg 680
Query: 481 atccaacagcttgcctaaaaaaatac 506
|||||||||||||||| |||||||||
Sbjct: 681 atccaacagcttgccttaaaaaatac 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space: 444416
Effective search space used: 444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
