BAC Information

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BAC

Clone NameMSMg01-058F02
Chromosome2 (Build37)
Map Location 144,871,987 - 144,996,722
singlet/doubletdoublet
Overlap genenone
Upstream gene4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
Downstream geneSlc24a3, LOC627312, OTTMUSG00000015643, LOC433482, LOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058F02.T7 (MSMg01no058_f02.b1)MSMg01-058F02.TJ (MSMg01no058_f02.g1)
ACCAG285261AG285262
length713704
length of high quality
(start - end)
249 (56 - 304)406 (63 - 468)
definitionCHROMAT_FILE: MSMg01no058_f02.b1 PHD_FILE: MSMg01no058_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:32 2005CHROMAT_FILE: MSMg01no058_f02.g1 PHD_FILE: MSMg01no058_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,871,987 - 144,872,235)(144,996,317 - 144,996,722)
sequence
CGGCGCAATACACTCCTATTCCGAGAGGAGCGCGGAATCAAGGCTTTGCT
GGAGACTGAGTACTTCCAACTCTTTAGAAAGATAATAGAAACAAAATAAG
AACAATGACGAAATGCAGTTGTGACAAACTGCCCAATTAGAGGGGAAAGG
AAAATAGTCAAGCAGCTTTAGCTTAATTAAGTGCTGTACAGATTGCTTTT
ACATTTTTAGAAAAGAATTTGAAGGAAAAAAGCACCAAAGAAATATTAAA
TTATTCATACATATTTGGGAATTTGTGTTAAGATGACTTTAAAAATGAAG
TCATGGGCTCAAAGAGACTTCTTAAAGGATCTGCCCTAGCCACCAGATAC
TGGACAGCAAGCCCAGTGTCCCCTAACTGAGAAGGGTTTTATTAAATTAA
GGCTCATAAATATTATGTTACATGATAGAGAAACTTAAAATGAATATTTA
AGTATGTGAAGGCATACAAACACGTTTGCAACTCATTGATGCATCAATAG
ACTATGACTGAAAACACGTAACACTTCTCCGCACTGAAACAGATGAAAAA
CACGGGTAAGAGAGGTTTAACCGCATATTACCACGCTCACTATTACCTAA
AAACAAAACCCCTTCCGTTTCCATTCCCCCCCAACCCCATTCGAAATGAA
AATTACCCTTTTACATTTGCCGCATTATGCAATTCCTACTACTTTTTCCC
GGAACCATTATAG
GGAGGCCTGGCGGACGCCTGTTTCGCAAAAGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCTCATTCCAGCACTAACTCTTCCTGACCTAAATTAA
ACAATCCTCATGTCCTAGCTACACAGAAAGAGAAAACAAAAACAGTATAG
ATTCTTTTCTATACTTCTAACCAAATACAGAGCTTTGCAAAACAGAAGCA
AACTTTTTAGTATATAACCAAATCTGGATTTACTTAGAAATTAAGAAAGA
GATCCTAAATTCCATGATTAGAAATGTTAGACATTATGTAACATAACTGC
CATACACCTCTATTTGGACTTTCTTATAAAAAGAACTAACCACCCTTTTT
ATAAGAAAGAAAAAGAACAAGGTGGGGGTGGGAATCATGGGAAACAAGCC
TCTGAGAAGATATCTGGTTATCTTTAATAATTACCACATGCCTTTAAACA
TAAAAATTACCTTTGGTTATTAGGAAGGCACCCCCCCATGACCATATGAA
CACCACAGTCTTGCACCCTGAAGCAAGAAACAGAGCTGAGAACACAGGTC
ACCTAAGGGTGGTTTATACCTTCATACCTCCCTTCCTATAAGACTTCACT
CAGTCACCTTTTGGGGGACCCAAGACCTTTAAAATGAGGGGACTTTTGAA
ATCTTTTGCCACTGGACACGTGATAGCATGTAAAACGCCCCCCCCCCAAA
ATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_f02.b1 MSMg01no058_f02.b1 CHROMAT_FILE:
MSMg01no058_f02.b1 PHD_FILE: MSMg01no058_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:32 2005
         (249 letters)



>mm_chr2_144871787_144872435
          Length = 649

 Score =  474 bits (245), Expect = e-138
 Identities = 248/249 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgagtacttccaactctttagaaagataatagaaacaaaataagaacaatgacgaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 ctgagtacttccaactctttagaaagataatagaaacaaaataagaacaatgatgaaatg 260

                                                                       
Query: 61  cagttgtgacaaactgcccaattagaggggaaaggaaaatagtcaagcagctttagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagttgtgacaaactgcccaattagaggggaaaggaaaatagtcaagcagctttagctta 320

                                                                       
Query: 121 attaagtgctgtacagattgcttttacatttttagaaaagaatttgaaggaaaaaagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attaagtgctgtacagattgcttttacatttttagaaaagaatttgaaggaaaaaagcac 380

                                                                       
Query: 181 caaagaaatattaaattattcatacatatttgggaatttgtgttaagatgactttaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaagaaatattaaattattcatacatatttgggaatttgtgttaagatgactttaaaaa 440

                    
Query: 241 tgaagtcat 249
           |||||||||
Sbjct: 441 tgaagtcat 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_f02.g1 MSMg01no058_f02.g1 CHROMAT_FILE:
MSMg01no058_f02.g1 PHD_FILE: MSMg01no058_f02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:32 2005
         (406 letters)



>mm_chr2_144996117_144996922
          Length = 806

 Score =  777 bits (402), Expect = 0.0
 Identities = 405/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctcattccagcactaactcttcctgacctaaattaaacaatcctcatgtcctagctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 tcctcattccagcactaactcttcctgacctaaattaaacaatcctcatgtcctagctac 547

                                                                       
Query: 61  acagaaagagaaaacaaaaacagtatagattcttttctatacttctaaccaaatacagag 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 acagaaggagaaaacaaaaacagtatagattcttttctatacttctaaccaaatacagag 487

                                                                       
Query: 121 ctttgcaaaacagaagcaaactttttagtatataaccaaatctggatttacttagaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ctttgcaaaacagaagcaaactttttagtatataaccaaatctggatttacttagaaatt 427

                                                                       
Query: 181 aagaaagagatcctaaattccatgattagaaatgttagacattatgtaacataactgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 aagaaagagatcctaaattccatgattagaaatgttagacattatgtaacataactgcca 367

                                                                       
Query: 241 tacacctctatttggactttcttataaaaagaactaaccaccctttttataagaaagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tacacctctatttggactttcttataaaaagaactaaccaccctttttataagaaagaaa 307

                                                                       
Query: 301 aagaacaaggtgggggtgggaatcatgggaaacaagcctctgagaagatatctggttatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aagaacaaggtgggggtgggaatcatgggaaacaagcctctgagaagatatctggttatc 247

                                                         
Query: 361 tttaataattaccacatgcctttaaacataaaaattacctttggtt 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tttaataattaccacatgcctttaaacataaaaattacctttggtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)