Query= MSMg01no058_j12.b1 MSMg01no058_j12.b1 CHROMAT_FILE:
MSMg01no058_j12.b1 PHD_FILE: MSMg01no058_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:53 2005
(289 letters)
>mm_chr2_80240238_80240935
Length = 698
Score = 497 bits (257), Expect = e-145
Identities = 282/295 (95%), Gaps = 9/295 (3%)
Strand = Plus / Plus
Query: 1 atatatcatgcacatatgataacatttttttgaaactcatagatgcctaactcatcaaag 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atatatcatgcacatatgataacatttttttgaaactcatagatgactaactcatcaaag 260
Query: 61 aatagaaaagaa------gaaaggagtttttaactaggacataatataatgcatgggtag 114
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatagaaaagaataagaagaaaggagtttttaactaggacataatataatgcatgggtag 320
Query: 115 aaattttgtagtattgaatgccaagctgaacaacccagcatctcttgttgcacttacagg 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaattttgtagtattgaatgccaagctgaacaacccagcatctcttgttgcacttacagg 380
Query: 175 tggcatccccagatccttgaacacggcagcctgaagattttcttcctctcctaattcttc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcatccccagatccttgaacacggcagcctgaagattttcttcctctcctaattcttc 440
Query: 235 aataaaagtccatttaagacgtt---ttcaaatatacaccttttgattgcatttg 286
|||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 441 aataaaagtccagcaaagacgttgttttcaaatatacaccttttgattgcatttg 495
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 698
Length adjustment: 9
Effective length of query: 280
Effective length of database: 689
Effective search space: 192920
Effective search space used: 192920
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no058_j12.g1 MSMg01no058_j12.g1 CHROMAT_FILE:
MSMg01no058_j12.g1 PHD_FILE: MSMg01no058_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:53 2005
(444 letters)
>mm_chr2_80389533_80390376
Length = 844
Score = 775 bits (401), Expect = 0.0
Identities = 428/437 (97%), Gaps = 2/437 (0%)
Strand = Plus / Minus
Query: 9 agcaccctgcggctgccaagcttcctctggagcagcctgagaccctgctgggttaatgca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 agcaccctgcggctgccaagcttcctctggagcagcctgagaccctgctgggttaatgca 585
Query: 69 gcctcaggagaccacacagggcggctgccaagcctaccctctgctccgctccagtggttg 128
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 584 gcctcaggagaccacacagggcggctgccaggcctaccctctgctccgctccagtggttg 525
Query: 129 gtggagattcagccaccttagaagtccttcagtccaacattcagcatgtgcagctctgaa 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gtggagattcagccaccttagaagtccttcagtccaacattcagcatgtgcagctctgaa 465
Query: 189 aaccctgtcctccgggagagagcagtgacttacatcccagtcagtgaactaaagagatta 248
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 464 aaccctgtcctccaggagagagcagtgacttacatcccagtcagtgaactaaagaga-aa 406
Query: 249 gt-tcaagaaaagttagttattcagagctagaaaggcagataattgatttagtgctaagt 307
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 405 atctcaagaaaagttagttattcagagctagaaaggtagataattgatttagtgctaagt 346
Query: 308 ttgcttcatcgctagatagtagtgcctttagctatgtgtgcacactataaatacataact 367
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgcttcattgctagatagtagtgcctttagctatgtgtgcacactataaatacataact 286
Query: 368 taaacctatatgggtttttaagaagcataacaataatggacatatatttgctttttttaa 427
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tagacctatatgggtttttaagaagcataacaataatggacatatatttgctttttttaa 226
Query: 428 aaagtattttgtggtaa 444
|||||||||||||||||
Sbjct: 225 aaagtattttgtggtaa 209
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
