BAC Information

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BAC

Clone NameMSMg01-058L18
Chromosome2 (Build37)
Map Location 109,978,905 - 109,979,099
singlet/doubletsinglet
Overlap genenone
Upstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4, Ccdc34
Downstream geneLOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058L18.T7 (MSMg01no058_l18.b1)MSMg01-058L18.TJ (MSMg01no058_l18.g1)
ACCAG285578AG285579
length707701
length of high quality
(start - end)
147 (68 - 214)196 (65 - 260)
definitionCHROMAT_FILE: MSMg01no058_l18.b1 PHD_FILE: MSMg01no058_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:03 2005CHROMAT_FILE: MSMg01no058_l18.g1 PHD_FILE: MSMg01no058_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCGCTAATACACTCCTATTTCAAAGAGAGGCGAGGAATTCAGGCTTT
ACCTAAACATGATAAAAGCAATCTACAGCAAACCAATAGCCAACATCAAA
GTAAATGGTGCCAAGCTGGAAGCAATCCCACTAAAATCAGGGACTAGACA
AGGCTGTCACACTCTCGCCCTACCTATTCAACATTGTACTTGAAGTCCTA
GCCAGAGCAATTAGACAACAAAAGGAGATCAAGGGGATACAAATTGGAAC
GAAAGAAGTCAAAATATCACTTTTTGCAGATGTTATGATAGTATATATAA
GTGACCCTAAAATTTCCACCAGAGAACTCCTAAGCCTGATAAACAGCTTC
AATGAATTAGCTGCATACAAAATTAACTCACACAAGTCACTGGCCTTTCT
CTATACAAAGGATAAACAGGTTGAAAAAGAAATTAGGGAAACAACACCCT
TCTCAATAGTCACAAATAATATAAAATACCTTGGCATGACTCTAATTAAG
GAAGTGAAAGATCTGTACGATAAGAACTTCCAGTCTCTAAAGAAAGAAAT
TACAGATCTCTGAAGACGGAAAGATCTCCCATGCTCATGGATTGGCAGGA
TCAATATTGTAAAATTGCTTATCTCGCCCAAAGCACTCTACAGATTCCAT
GCAAACCTTATCAAAATCTCAACTCAATTCTTCAACGAATTAACAAGGCC
AATCGGC
CACGTAGGCTGGCGACGCCTGGTCCAAAACGGGGGTGAACTATAAAAGTT
TCCGCGAAATTCTAGTAATGGCAACTTCATGAACCAGTGGGTAACTGACA
ATGGCATACCGCTCTTCTAGTTCACACGTATCTGCTATTCTTAAGTTGTT
GTGTATTTTACTTTTTGAAAAATTTATATACATTCCAGCCATTGCACCTC
CCTTCCCAGCCCCTCCTCCCTTAGTTCCTCATTCTATTTCTCCTCCCCCT
TGCTTCTGAAAGGGTGCTCCTCCAGACCCCTCCCTTCCCTAGGGCCTCAA
GTATTTCCAGATATTATGTGCATCTTTTCCCACTGAGGCCAGACCATGTA
ACCCTCTGCTATACATGTTCCAGGGGCTTCTGAATAGCCTGTTATGCTGC
GCATGCTACCTGGTTGGTGATTCAGCCTCTGGGAACTCCATGGGGTCTGT
CTTAGTGCAGATTTAAGGTCTTCTCAAGGGGTAGATCGACCCTTCAGCCT
CTTAAATTCTTCCTCTAGTTCCCCCAGCTTCCCGACTTCCCATTTGTCAG
TTGCTGATCCTACAGCCTGATCCCTCGCCCTAACGCAAAAAAACACCAAT
CCTGCAAGGATGGGAATGAGCCTATTCCCCCCTGGCCCTAATACCAAAAT
CACAGCCACCCGACTTCATGCCCACCAACCTTCAACCAAATCCAAAATTA
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_l18.g1 MSMg01no058_l18.g1 CHROMAT_FILE:
MSMg01no058_l18.g1 PHD_FILE: MSMg01no058_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:03 2005
         (196 letters)



>mm_chr2_109978705_109979300
          Length = 596

 Score =  346 bits (179), Expect = e-100
 Identities = 191/195 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtaatggcaacttcatgaaccagtgggtaactgacaatggcataccgctcttctagttca 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 201 gtaatggcaacttcatgaaccagtgggtaactgacaatggcatactgttcttctagttca 260

                                                                       
Query: 61  cacgtatctgctattcttaagttgttgtgtattttactttttgaaaaatttatatacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacgtatctgctattcttaagttgttgtgtattttactttttgaaaaatttatatacatt 320

                                                                       
Query: 121 ccagccattgcacctcccttcccagcccctcctcccttagttcctcattctatttctcct 180
           ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 321 ccagccattgcacctcccttcccagtccctcctccctcagttcctcattctatttctcct 380

                          
Query: 181 cccccttgcttctga 195
           |||||||||||||||
Sbjct: 381 cccccttgcttctga 395


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)